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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1470 1471 1472 1473 1474 1475 1476 1477 1478 ... 1720 1721 » 73651-73700 / 86044 show all
mlin-fermikit	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	98.7513	99.9277	97.6023	62.0856	1382	1	1384	34	31	91.1765
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.5516	99.7271	97.4035	50.4781	1462	4	1463	39	31	79.4872
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	80.4826	84.6154	76.7347	91.5952	187	34	188	57	31	54.3860
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	94.7018	96.2862	93.1687	88.3587	1063	41	1132	83	31	37.3494
ltrigg-rtg2	SNP	ti	segdup	homalt	99.7804	99.9734	99.5881	87.6176	7503	2	7496	31	31	100.0000
ndellapenna-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	96.2011	96.5962	95.8091	80.4640	823	29	823	36	31	86.1111
ndellapenna-hhga	SNP	ti	segdup	homalt	99.7406	99.8934	99.5882	88.2312	7497	8	7497	31	31	100.0000
qzeng-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	90.9981	84.0955	99.1351	58.5016	12965	2452	4585	40	31	77.5000
bgallagher-sentieon	INDEL	I1_5	HG002complexvar	homalt	99.8440	99.9256	99.7625	52.9997	13438	10	13443	32	31	96.8750
bgallagher-sentieon	SNP	*	map_l250_m1_e0	*	98.3858	98.7400	98.0341	88.9251	7131	91	7131	143	31	21.6783
bgallagher-sentieon	SNP	ti	map_l125_m0_e0	*	98.9758	99.2086	98.7441	75.3623	12661	101	12659	161	31	19.2547
bgallagher-sentieon	SNP	tv	HG002complexvar	*	99.9492	99.9313	99.9671	22.0213	245983	169	245892	81	31	38.2716
bgallagher-sentieon	SNP	tv	map_l100_m1_e0	*	99.3526	99.5959	99.1104	66.8404	24402	99	24398	219	31	14.1553
bgallagher-sentieon	SNP	tv	map_l100_m2_e0	*	99.3603	99.6045	99.1174	68.4796	24934	99	24930	222	31	13.9640
bgallagher-sentieon	SNP	tv	map_l100_m2_e1	*	99.3647	99.6084	99.1222	68.5080	25184	99	25180	223	31	13.9013
anovak-vg	INDEL	I1_5	map_l100_m1_e0	het	47.9187	38.2239	64.2023	89.2961	297	480	330	184	31	16.8478
anovak-vg	INDEL	I1_5	map_l100_m2_e0	het	48.1704	38.4615	64.4359	89.9093	305	488	337	186	31	16.6667
anovak-vg	INDEL	I1_5	map_l100_m2_e1	het	47.7657	37.9012	64.5714	90.0794	307	503	339	186	31	16.6667
anovak-vg	INDEL	I1_5	map_l250_m1_e0	*	58.7189	62.2642	55.5556	96.4296	66	40	70	56	31	55.3571
anovak-vg	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	67.0246	87.7551	54.2169	78.5530	43	6	45	38	31	81.5789
asubramanian-gatk	INDEL	D16_PLUS	*	hetalt	95.6218	93.1712	98.2048	39.4536	1801	132	2024	37	31	83.7838
asubramanian-gatk	INDEL	D16_PLUS	HG002complexvar	*	96.5513	95.8004	97.3142	67.2463	1574	69	1558	43	31	72.0930
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	95.6445	93.2160	98.2030	39.3698	1800	131	2022	37	31	83.7838
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	95.6445	93.2160	98.2030	39.3698	1800	131	2022	37	31	83.7838
asubramanian-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.8269	92.5398	99.3561	30.5284	4416	356	4938	32	31	96.8750
asubramanian-gatk	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.1590	93.4295	99.0528	42.4608	2915	205	3451	33	31	93.9394
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.2667	91.9260	98.8593	33.2487	2334	205	2860	33	31	93.9394
asubramanian-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.1496	91.6793	98.8930	34.8700	2424	220	2948	33	31	93.9394
asubramanian-gatk	SNP	*	HG002complexvar	het	98.3318	96.7914	99.9221	19.0611	450561	14936	450442	351	31	8.8319
bgallagher-sentieon	INDEL	D16_PLUS	HG002complexvar	*	97.3999	97.3828	97.4170	66.7553	1600	43	1584	42	31	73.8095
bgallagher-sentieon	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	97.5221	95.5960	99.5274	32.5866	6512	300	6529	31	31	100.0000
ckim-dragen	SNP	tv	map_l100_m0_e0	*	98.2217	98.8903	97.5621	72.7546	10961	123	10965	274	31	11.3139
ckim-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.8001	97.9911	97.6098	69.6269	1756	36	1756	43	31	72.0930
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	53.1268	90.0000	37.6866	90.4490	99	11	101	167	31	18.5629
ciseli-custom	SNP	ti	func_cds	*	98.7839	99.4488	98.1278	24.0438	13711	76	13680	261	31	11.8774
ciseli-custom	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.6881	99.6496	95.8023	36.3088	1422	5	1415	62	31	50.0000
ckim-dragen	INDEL	D16_PLUS	HG002compoundhet	het	93.6315	98.5185	89.2063	59.4595	399	6	281	34	31	91.1765
ckim-dragen	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	94.3619	97.5940	91.3371	87.9208	649	16	485	46	31	67.3913
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	66.4160	55.2083	83.3333	76.5144	212	172	210	42	31	73.8095
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5071	99.8869	99.1302	72.7419	3533	4	3533	31	31	100.0000
ckim-gatk	SNP	*	HG002complexvar	homalt	99.2945	98.6114	99.9870	20.0389	284567	4007	284543	37	31	83.7838
ckim-gatk	SNP	*	map_l125_m0_e0	*	76.5382	63.0075	97.4697	89.2235	12214	7171	12211	317	31	9.7792
ckim-gatk	SNP	tv	map_siren	*	92.9580	88.1058	98.3758	71.0821	40467	5463	40459	668	31	4.6407
ckim-dragen	INDEL	D6_15	HG002compoundhet	hetalt	96.5353	93.6572	99.5958	23.6915	7634	517	7638	31	31	100.0000
ckim-dragen	INDEL	I6_15	*	het	98.9990	98.7043	99.2956	59.4838	9903	130	9867	70	31	44.2857
ckim-dragen	SNP	*	map_l250_m2_e0	*	97.2970	97.6791	96.9179	89.7648	7702	183	7704	245	31	12.6531
ckim-dragen	SNP	ti	HG002complexvar	homalt	99.9527	99.9214	99.9840	18.3095	193311	152	193417	31	31	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5071	99.8869	99.1302	72.8167	3533	4	3533	31	31	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.4424	99.5121	99.3729	70.5814	45479	223	45479	287	31	10.8014
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.4424	99.5121	99.3729	70.5814	45479	223	45479	287	31	10.8014

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