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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1463 1464 1465 1466 1467 1468 1469 1470 1471 ... 1720 1721 » 73301-73350 / 86044 show all
ndellapenna-hhga	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	*	70.8955	66.9014	75.3968	42.7273	95	47	95	31	29	93.5484
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	95.3878	94.0484	96.7658	60.9497	1517	96	1496	50	29	58.0000
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	92.3441	90.1387	94.6602	59.6342	585	64	585	33	29	87.8788
ndellapenna-hhga	SNP	*	map_l125_m0_e0	*	98.7976	97.9108	99.7006	72.0168	18980	405	18980	57	29	50.8772
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.2708	98.9378	99.6061	37.1789	10618	114	10620	42	29	69.0476
qzeng-custom	INDEL	*	HG002compoundhet	hetalt	86.4434	76.5369	99.2955	48.8192	19272	5908	5638	40	29	72.5000
qzeng-custom	INDEL	*	map_l150_m1_e0	het	80.8118	71.6959	92.5834	95.0292	613	242	749	60	29	48.3333
mlin-fermikit	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	97.3131	96.7575	97.8752	72.7174	1492	50	1474	32	29	90.6250
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.3255	93.2427	99.6191	24.9186	7548	547	7585	29	29	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.3159	93.2216	99.6227	27.1443	7619	554	7658	29	29	100.0000
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.2668	99.4808	99.0537	68.1013	3257	17	3245	31	29	93.5484
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	86.2391	93.9189	79.7203	77.1200	139	9	114	29	29	100.0000
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8861	98.5202	99.2547	76.5663	6325	95	6259	47	29	61.7021
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8861	98.5202	99.2547	76.5663	6325	95	6259	47	29	61.7021
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	97.2521	95.5720	98.9924	51.2038	2849	132	2849	29	29	100.0000
ckim-dragen	SNP	*	map_l125_m1_e0	homalt	99.5672	99.3256	99.8098	61.0436	16791	114	16796	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e0	homalt	99.5644	99.3151	99.8150	63.8939	17256	119	17261	32	29	90.6250
ckim-dragen	SNP	*	map_l125_m2_e1	homalt	99.5683	99.3212	99.8166	63.9224	17413	119	17418	32	29	90.6250
ckim-dragen	SNP	*	map_l250_m1_e0	*	97.2004	97.5768	96.8269	89.0554	7047	175	7049	231	29	12.5541
ciseli-custom	SNP	ti	func_cds	homalt	99.3195	99.8483	98.7963	20.7719	5267	8	5253	64	29	45.3125
ciseli-custom	SNP	ti	map_l150_m0_e0	het	72.0997	66.3920	78.8811	87.9805	3384	1713	3384	906	29	3.2009
ciseli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	44.0468	83.2421	29.9463	79.5867	760	153	781	1827	29	1.5873
ckim-dragen	INDEL	*	map_siren	*	97.9669	98.2321	97.7032	83.7470	7279	131	7274	171	29	16.9591
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5960	99.7232	99.4692	61.2535	55477	154	55466	296	29	9.7973
ckim-dragen	SNP	tv	*	homalt	99.9757	99.9621	99.9894	19.9141	376980	143	377083	40	29	72.5000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6289	93.8110	99.6213	24.3430	7594	501	7629	29	29	100.0000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.6034	93.7599	99.6247	26.3649	7663	510	7699	29	29	100.0000
cchapple-custom	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.1384	90.5537	98.0186	60.1764	1668	174	1682	34	29	85.2941
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.7466	96.0553	99.4986	53.1009	2362	97	6945	35	29	82.8571
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.4351	99.3209	97.5651	66.8707	1170	8	1162	29	29	100.0000
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.2941	99.0714	99.5178	62.5456	9602	90	9699	47	29	61.7021
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	het	44.1767	33.5366	64.7059	59.2000	55	109	66	36	29	80.5556
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_11to50	*	58.9524	49.6815	72.4771	51.3393	78	79	79	30	29	96.6667
ciseli-custom	INDEL	D6_15	map_l125_m2_e0	*	55.0607	53.9683	56.1983	92.1986	68	58	68	53	29	54.7170
ciseli-custom	INDEL	D6_15	map_l125_m2_e1	*	55.2000	53.9062	56.5574	92.2687	69	59	69	53	29	54.7170
ciseli-custom	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	32.7016	22.2672	61.5385	82.5000	55	192	56	35	29	82.8571
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e0	*	61.1650	72.0000	53.1646	88.2789	18	7	42	37	29	78.3784
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e0	het	64.5327	93.3333	49.3151	88.3013	14	1	36	37	29	78.3784
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e1	*	62.2963	74.0741	53.7500	88.5057	20	7	43	37	29	78.3784
gduggal-snapvard	INDEL	I6_15	map_l150_m2_e1	het	65.2174	93.7500	50.0000	88.5093	15	1	37	37	29	78.3784
ghariani-varprowl	INDEL	I1_5	map_l100_m2_e0	het	94.1968	98.3607	90.3712	90.4265	780	13	779	83	29	34.9398
ghariani-varprowl	INDEL	I1_5	map_l100_m2_e1	het	94.1953	98.2716	90.4437	90.5024	796	14	795	84	29	34.5238
ghariani-varprowl	SNP	*	HG002compoundhet	het	84.6682	93.2007	77.5669	61.4559	13214	964	13447	3889	29	0.7457
ghariani-varprowl	SNP	*	map_l250_m0_e0	*	92.9666	96.5808	89.6132	94.6918	2062	73	2062	239	29	12.1339
ghariani-varprowl	SNP	tv	segdup	homalt	99.0657	99.8456	98.2979	91.0501	3233	5	3234	56	29	51.7857
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	71.4799	62.8596	82.8402	34.4961	743	439	140	29	29	100.0000
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	65.6529	54.9051	81.6327	49.3103	347	285	240	54	29	53.7037
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	71.1515	58.0150	91.9786	49.4595	1473	1066	344	30	29	96.6667
gduggal-snapplat	SNP	ti	map_l250_m0_e0	*	85.2021	77.7372	94.2529	96.3701	1065	305	1066	65	29	44.6154
gduggal-snapvard	INDEL	C1_5	HG002complexvar	homalt	0.0000	0.0000	95.2328	73.0263	0	0	859	43	29	67.4419

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