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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
72251-72300 / 86044 show all
gduggal-snapfbSNPtisegdup*
99.1459
99.5137
98.7809
90.9477
19442951944624023
9.5833
gduggal-snapplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
50.4391
35.8961
84.7921
83.3242
677120977513923
16.5468
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.4066
99.4274
99.3858
50.7439
1180768118127323
31.5068
jlack-gatkINDELI16_PLUSHG002complexvar*
97.1912
96.4859
97.9070
66.9992
12634612632723
85.1852
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
93.7644
99.0244
89.0351
90.6863
20322032523
92.0000
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.8868
97.0512
98.7368
59.9494
18765718762423
95.8333
hfeng-pmm1INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
95.3481
96.0152
94.6903
79.5197
506214282423
95.8333
hfeng-pmm1INDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
97.4189
97.8723
96.9697
59.4335
736167362323
100.0000
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
88.8218
91.3043
86.4706
35.3612
147141472323
100.0000
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2193
95.0054
99.5389
60.9375
798942079883723
62.1622
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.3335
93.6712
99.1515
51.7685
327122132722823
82.1429
hfeng-pmm3SNP*map_l150_m1_e0*
99.4475
99.3825
99.5125
74.0748
304201893041414923
15.4362
hfeng-pmm3SNP*map_l150_m2_e0*
99.4612
99.4035
99.5190
75.5411
316621903165615323
15.0327
hfeng-pmm3SNP*map_l150_m2_e1*
99.4641
99.4070
99.5212
75.5898
320191913201315423
14.9351
hfeng-pmm2SNP*map_l100_m0_e0het
99.0069
99.2124
98.8022
73.2241
210381672103425523
9.0196
hfeng-pmm2SNP*map_l150_m1_e0het
98.9149
99.1251
98.7057
78.5477
191471691914125123
9.1634
hfeng-pmm2SNP*map_l150_m2_e0het
98.9416
99.1556
98.7286
79.5932
199631701995725723
8.9494
hfeng-pmm2SNP*map_l150_m2_e1het
98.9487
99.1652
98.7332
79.6403
201931702018725923
8.8803
hfeng-pmm2SNPtimap_l125_m1_e0*
99.4105
99.4648
99.3563
71.7136
291781572917418923
12.1693
hfeng-pmm2SNPtimap_l125_m2_e0*
99.4203
99.4745
99.3661
73.2412
300991593009519223
11.9792
hfeng-pmm2SNPtimap_l125_m2_e1*
99.4245
99.4799
99.3693
73.2743
304101593040619323
11.9171
hfeng-pmm2SNPtvmap_siren*
99.6626
99.6995
99.6257
59.0414
457921384578417223
13.3721
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.9134
97.1029
98.7375
60.0294
18775618772423
95.8333
hfeng-pmm3INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
95.2485
95.8254
94.6785
79.7485
505224272423
95.8333
hfeng-pmm1SNPtimap_l150_m1_e0*
99.3490
99.1071
99.5921
73.5929
19536176195328023
28.7500
hfeng-pmm1SNPtimap_l150_m2_e0*
99.3647
99.1322
99.5983
75.0541
20334178203308223
28.0488
hfeng-pmm1SNPtimap_l150_m2_e1*
99.3663
99.1362
99.5975
75.1263
20544179205408323
27.7108
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
81.2500
70.8752
95.1830
49.0677
4942034942523
92.0000
jlack-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
93.7644
99.0244
89.0351
90.6863
20322032523
92.0000
jlack-gatkSNP*map_l250_m0_e0het
89.1456
97.3440
82.2210
96.2201
146640146631723
7.2555
raldana-dualsentieonSNP*map_l100_m1_e0*
99.3579
99.3895
99.3263
63.6563
719614427195048823
4.7131
raldana-dualsentieonSNP*map_l100_m2_e0*
99.3627
99.3970
99.3284
65.5143
735184467350749723
4.6278
raldana-dualsentieonSNP*map_l100_m2_e1*
99.3646
99.4032
99.3261
65.5411
742914467428050423
4.5635
raldana-dualsentieonSNPtimap_siren*
99.5625
99.5516
99.5734
52.8084
999054509989042823
5.3738
rpoplin-dv42INDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
91.0405
84.0481
99.3020
38.2843
321461032722323
100.0000
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
95.0478
92.5550
97.6786
60.5911
10948810942623
88.4615
rpoplin-dv42INDELD1_5HG002complexvarhomalt
99.7026
99.6414
99.7639
58.4249
1056038105652523
92.0000
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.7294
97.9480
99.5234
39.3399
501210550122423
95.8333
rpoplin-dv42INDELI6_15lowcmp_AllRepeats_51to200bp_gt95identity_merged*
87.2466
79.7847
96.2482
67.1252
6671696672623
88.4615
rpoplin-dv42SNP*map_l250_m0_e0het
97.3404
97.2112
97.4700
92.1200
14644214643823
60.5263
rpoplin-dv42SNPtimap_l150_m2_e0homalt
99.3810
99.0809
99.6830
73.3835
75467075462423
95.8333
rpoplin-dv42SNPtimap_l150_m2_e1homalt
99.3872
99.0901
99.6862
73.4415
76237076232423
95.8333
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
97.1157
94.7910
99.5574
48.6452
562330956232523
92.0000
raldana-dualsentieonINDELD6_15HG002complexvarhet
95.7688
92.6603
99.0931
57.6076
289122928412624
92.3077
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.3117
97.1963
99.4531
73.3782
624018061833424
70.5882
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.3117
97.1963
99.4531
73.3782
624018061833424
70.5882
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9892
98.4640
99.5201
68.3963
450007024500021724
11.0599
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9892
98.4640
99.5201
68.3963
450007024500021724
11.0599
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.8033
98.0989
99.5179
50.4556
557310855732724
88.8889
ndellapenna-hhgaINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
94.0865
90.1750
98.3527
42.9913
159717416122724
88.8889