PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
72001-72050 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.8863 | 96.6892 | 99.1133 | 68.8334 | 2570 | 88 | 2571 | 23 | 22 | 95.6522 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3470 | 98.2759 | 88.8889 | 80.5601 | 2964 | 52 | 2968 | 371 | 22 | 5.9299 | |
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | het | 83.4371 | 98.2405 | 72.5108 | 94.3348 | 335 | 6 | 335 | 127 | 22 | 17.3228 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m2_e1 | het | 62.5555 | 88.2353 | 48.4536 | 93.1449 | 45 | 6 | 47 | 50 | 22 | 44.0000 | |
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | homalt | 96.6460 | 93.8290 | 99.6373 | 42.9597 | 9944 | 654 | 9340 | 34 | 22 | 64.7059 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 61.5021 | 60.6742 | 62.3529 | 71.9472 | 54 | 35 | 53 | 32 | 22 | 68.7500 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 73.4853 | 92.4528 | 60.9756 | 70.1818 | 49 | 4 | 50 | 32 | 22 | 68.7500 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6199 | 97.4770 | 99.7898 | 71.4168 | 15184 | 393 | 15192 | 32 | 22 | 68.7500 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2813 | 99.1758 | 99.3872 | 70.5555 | 3730 | 31 | 3730 | 23 | 22 | 95.6522 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2813 | 99.1758 | 99.3872 | 70.5555 | 3730 | 31 | 3730 | 23 | 22 | 95.6522 | |
| hfeng-pmm3 | SNP | * | map_siren | homalt | 99.9057 | 99.8840 | 99.9274 | 53.2388 | 55092 | 64 | 55083 | 40 | 22 | 55.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8189 | 94.9153 | 98.8005 | 65.6974 | 2520 | 135 | 2471 | 30 | 22 | 73.3333 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.2411 | 99.0960 | 99.3867 | 70.6527 | 3727 | 34 | 3727 | 23 | 22 | 95.6522 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.2411 | 99.0960 | 99.3867 | 70.6527 | 3727 | 34 | 3727 | 23 | 22 | 95.6522 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5485 | 99.7455 | 99.3523 | 71.7771 | 3528 | 9 | 3528 | 23 | 22 | 95.6522 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.8008 | 96.2364 | 99.4170 | 63.5191 | 5114 | 200 | 5116 | 30 | 22 | 73.3333 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7656 | 98.4611 | 99.0719 | 67.7717 | 3839 | 60 | 3843 | 36 | 22 | 61.1111 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.4993 | 94.2786 | 98.8271 | 62.5995 | 2274 | 138 | 2275 | 27 | 22 | 81.4815 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8719 | 99.3172 | 98.4305 | 81.7659 | 6836 | 47 | 6836 | 109 | 22 | 20.1835 | |
| jlack-gatk | SNP | * | map_l100_m1_e0 | homalt | 99.3858 | 98.8816 | 99.8952 | 58.5121 | 26701 | 302 | 26701 | 28 | 22 | 78.5714 | |
| jlack-gatk | SNP | * | map_l100_m2_e0 | homalt | 99.3957 | 98.8991 | 99.8972 | 61.0320 | 27220 | 303 | 27220 | 28 | 22 | 78.5714 | |
| jlack-gatk | SNP | * | map_l100_m2_e1 | homalt | 99.3962 | 98.8991 | 99.8982 | 60.9989 | 27490 | 306 | 27490 | 28 | 22 | 78.5714 | |
| jlack-gatk | SNP | ti | HG002compoundhet | * | 99.6570 | 99.7425 | 99.5716 | 36.7466 | 17433 | 45 | 17431 | 75 | 22 | 29.3333 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.8586 | 99.2554 | 94.5749 | 83.0098 | 9065 | 68 | 9065 | 520 | 22 | 4.2308 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.8586 | 99.2554 | 94.5749 | 83.0098 | 9065 | 68 | 9065 | 520 | 22 | 4.2308 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.6540 | 95.9541 | 99.4153 | 63.0411 | 5099 | 215 | 5101 | 30 | 22 | 73.3333 | |
| hfeng-pmm1 | SNP | ti | map_l100_m0_e0 | * | 99.4038 | 99.1778 | 99.6308 | 67.2084 | 21592 | 179 | 21589 | 80 | 22 | 27.5000 | |
| hfeng-pmm1 | SNP | tv | map_siren | * | 99.7188 | 99.5885 | 99.8494 | 56.2301 | 45741 | 189 | 45734 | 69 | 22 | 31.8841 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7285 | 99.8188 | 99.6383 | 55.6923 | 6061 | 11 | 6061 | 22 | 22 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | het | 93.6860 | 98.1795 | 89.5858 | 89.8045 | 2265 | 42 | 2271 | 264 | 22 | 8.3333 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | het | 93.7377 | 98.1647 | 89.6927 | 89.8540 | 2300 | 43 | 2306 | 265 | 22 | 8.3019 | |
| jlack-gatk | INDEL | * | map_siren | het | 95.6389 | 98.6025 | 92.8482 | 85.9136 | 4445 | 63 | 4453 | 343 | 22 | 6.4140 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3531 | 98.9700 | 99.7391 | 58.7473 | 55058 | 573 | 55048 | 144 | 22 | 15.2778 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | het | 93.4882 | 90.9774 | 96.1415 | 59.6889 | 605 | 60 | 598 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 91.6035 | 89.2202 | 94.1176 | 80.0098 | 389 | 47 | 384 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.3072 | 97.2880 | 99.3480 | 72.0840 | 3659 | 102 | 3657 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.3072 | 97.2880 | 99.3480 | 72.0840 | 3659 | 102 | 3657 | 24 | 22 | 91.6667 | |
| rpoplin-dv42 | SNP | ti | HG002compoundhet | het | 99.5469 | 99.3898 | 99.7044 | 38.8720 | 9447 | 58 | 9445 | 28 | 22 | 78.5714 | |
| rpoplin-dv42 | SNP | ti | map_l150_m1_e0 | homalt | 99.3702 | 99.0583 | 99.6841 | 71.0853 | 7258 | 69 | 7258 | 23 | 22 | 95.6522 | |
| raldana-dualsentieon | SNP | tv | * | het | 99.8532 | 99.8447 | 99.8617 | 22.1748 | 590777 | 919 | 590703 | 818 | 22 | 2.6895 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.3912 | 83.6820 | 93.6620 | 67.7273 | 400 | 78 | 399 | 27 | 22 | 81.4815 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 89.0162 | 97.8232 | 81.6639 | 77.4026 | 1483 | 33 | 1492 | 335 | 22 | 6.5672 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 74.5996 | 62.5114 | 92.4837 | 50.4052 | 1369 | 821 | 283 | 23 | 22 | 95.6522 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 68.4170 | 67.7419 | 69.1057 | 99.9232 | 84 | 40 | 85 | 38 | 22 | 57.8947 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | * | 59.7750 | 58.6207 | 60.9756 | 96.0271 | 51 | 36 | 50 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m1_e0 | het | 70.0000 | 91.3043 | 56.7568 | 95.0634 | 42 | 4 | 42 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | * | 61.1538 | 60.0000 | 62.3529 | 96.1223 | 54 | 36 | 53 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | het | 70.9677 | 91.6667 | 57.8947 | 95.2970 | 44 | 4 | 44 | 32 | 22 | 68.7500 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | het | 89.8148 | 98.4772 | 82.5532 | 89.6186 | 582 | 9 | 582 | 123 | 22 | 17.8862 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | * | 90.5545 | 95.5013 | 86.0950 | 91.3170 | 743 | 35 | 743 | 120 | 22 | 18.3333 | |