PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71751-71800 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.5543 | 98.5633 | 94.6256 | 88.5760 | 2607 | 38 | 2641 | 150 | 21 | 14.0000 | |
| qzeng-custom | SNP | tv | segdup | homalt | 99.1318 | 98.9500 | 99.3142 | 89.4844 | 3204 | 34 | 3186 | 22 | 21 | 95.4545 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3535 | 95.3835 | 99.4066 | 24.9710 | 3843 | 186 | 3853 | 23 | 21 | 91.3043 | |
| ndellapenna-hhga | INDEL | I6_15 | HG002complexvar | hetalt | 95.3564 | 92.8046 | 98.0525 | 53.9032 | 1135 | 88 | 1158 | 23 | 21 | 91.3043 | |
| ndellapenna-hhga | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.2384 | 97.7540 | 98.7277 | 67.1771 | 4657 | 107 | 4656 | 60 | 21 | 35.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2992 | 97.3060 | 99.3129 | 66.5408 | 6068 | 168 | 6071 | 42 | 21 | 50.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e0 | homalt | 99.7835 | 99.6512 | 99.9162 | 62.4810 | 27427 | 96 | 27427 | 23 | 21 | 91.3043 | |
| ndellapenna-hhga | SNP | * | map_l100_m2_e1 | homalt | 99.7857 | 99.6546 | 99.9170 | 62.4746 | 27700 | 96 | 27700 | 23 | 21 | 91.3043 | |
| ndellapenna-hhga | SNP | ti | HG002compoundhet | het | 98.2624 | 96.9805 | 99.5786 | 37.2500 | 9218 | 287 | 9216 | 39 | 21 | 53.8462 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.8620 | 98.3731 | 99.3556 | 61.7355 | 4777 | 79 | 4780 | 31 | 21 | 67.7419 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1203 | 98.5371 | 97.7070 | 73.4654 | 3570 | 53 | 3835 | 90 | 21 | 23.3333 | |
| ltrigg-rtg2 | SNP | tv | segdup | * | 98.9872 | 99.6132 | 98.3690 | 88.4663 | 8499 | 33 | 8504 | 141 | 21 | 14.8936 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | * | 53.6585 | 39.8792 | 81.9876 | 92.9540 | 132 | 199 | 132 | 29 | 21 | 72.4138 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | * | 53.7374 | 39.9399 | 82.0988 | 93.1530 | 133 | 200 | 133 | 29 | 21 | 72.4138 | |
| mlin-fermikit | INDEL | * | segdup | homalt | 97.4948 | 97.2917 | 97.6987 | 92.4653 | 934 | 26 | 934 | 22 | 21 | 95.4545 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.7305 | 90.6250 | 86.9136 | 84.8258 | 348 | 36 | 352 | 53 | 21 | 39.6226 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | * | 60.5938 | 47.4048 | 83.9506 | 83.7513 | 137 | 152 | 136 | 26 | 21 | 80.7692 | |
| mlin-fermikit | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0307 | 62.3529 | 67.9487 | 83.1533 | 53 | 32 | 53 | 25 | 21 | 84.0000 | |
| gduggal-snapvard | SNP | tv | segdup | homalt | 98.3768 | 97.4676 | 99.3031 | 90.1749 | 3156 | 82 | 3135 | 22 | 21 | 95.4545 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 49.6593 | 34.5745 | 88.0952 | 72.2117 | 260 | 492 | 259 | 35 | 21 | 60.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | * | 90.8639 | 95.8060 | 86.4066 | 91.3346 | 731 | 32 | 731 | 115 | 21 | 18.2609 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | het | 89.3913 | 98.4674 | 81.8471 | 92.4273 | 514 | 8 | 514 | 114 | 21 | 18.4211 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.3046 | 38.5882 | 91.6201 | 62.7471 | 328 | 522 | 328 | 30 | 21 | 70.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m0_e0 | * | 74.8768 | 73.7864 | 76.0000 | 91.3420 | 76 | 27 | 76 | 24 | 21 | 87.5000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m0_e0 | het | 82.5175 | 98.3333 | 71.0843 | 91.9024 | 59 | 1 | 59 | 24 | 21 | 87.5000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 71.3745 | 60.3412 | 87.3457 | 93.7848 | 283 | 186 | 283 | 41 | 21 | 51.2195 | |
| gduggal-snapvard | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 69.1489 | 89.5439 | 0 | 0 | 65 | 29 | 21 | 72.4138 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 72.2222 | 75.4768 | 0 | 0 | 65 | 25 | 21 | 84.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 79.8588 | 70.1897 | 92.6174 | 71.9397 | 259 | 110 | 276 | 22 | 21 | 95.4545 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 83.5587 | 94.3683 | 74.9709 | 75.2021 | 620 | 37 | 644 | 215 | 21 | 9.7674 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 62.5767 | 48.0000 | 89.8678 | 23.0508 | 312 | 338 | 204 | 23 | 21 | 91.3043 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 55.9562 | 40.2810 | 91.6031 | 29.1892 | 688 | 1020 | 240 | 22 | 21 | 95.4545 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | * | 85.3532 | 79.9632 | 91.5223 | 92.6622 | 870 | 218 | 1004 | 93 | 21 | 22.5806 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | * | 85.6819 | 80.6649 | 91.3644 | 92.9665 | 922 | 221 | 1058 | 100 | 21 | 21.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | * | 85.6170 | 80.5532 | 91.3601 | 93.0292 | 932 | 225 | 1068 | 101 | 21 | 20.7921 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 37.3854 | 26.5403 | 63.2184 | 72.2930 | 56 | 155 | 55 | 32 | 21 | 65.6250 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | * | 83.0230 | 95.8478 | 73.2252 | 92.0420 | 277 | 12 | 361 | 132 | 21 | 15.9091 | |
| gduggal-snapvard | SNP | * | func_cds | het | 99.2494 | 99.0323 | 99.4675 | 33.3113 | 11053 | 108 | 11020 | 59 | 21 | 35.5932 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 31.6999 | 78.9855 | 19.8291 | 89.3462 | 218 | 58 | 232 | 938 | 21 | 2.2388 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 75.4062 | 69.0323 | 83.0769 | 78.2609 | 107 | 48 | 108 | 22 | 21 | 95.4545 | |
| gduggal-snapfb | SNP | * | map_l100_m0_e0 | homalt | 97.2638 | 95.1377 | 99.4870 | 75.4317 | 11055 | 565 | 11055 | 57 | 21 | 36.8421 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | homalt | 97.7543 | 95.9184 | 99.6620 | 74.9969 | 16215 | 690 | 16216 | 55 | 21 | 38.1818 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e0 | homalt | 97.8012 | 96.0000 | 99.6714 | 76.3723 | 16680 | 695 | 16681 | 55 | 21 | 38.1818 | |
| gduggal-snapfb | SNP | * | map_l125_m2_e1 | homalt | 97.8213 | 96.0358 | 99.6744 | 76.3853 | 16837 | 695 | 16838 | 55 | 21 | 38.1818 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e0 | homalt | 98.4558 | 97.1544 | 99.7924 | 69.0150 | 17788 | 521 | 17789 | 37 | 21 | 56.7568 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e1 | homalt | 98.4714 | 97.1829 | 99.7946 | 68.9893 | 17973 | 521 | 17974 | 37 | 21 | 56.7568 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 15.1782 | 85.4545 | 8.3287 | 79.8084 | 141 | 24 | 151 | 1662 | 21 | 1.2635 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 90.2475 | 83.3770 | 98.3520 | 63.7948 | 13698 | 2731 | 13726 | 230 | 21 | 9.1304 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e1 | * | 78.2258 | 75.7812 | 80.8333 | 92.4051 | 97 | 31 | 97 | 23 | 21 | 91.3043 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 83.9506 | 95.7746 | 74.7253 | 93.4391 | 68 | 3 | 68 | 23 | 21 | 91.3043 | |