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Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
71501-71550 / 86044 show all
dgrover-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8478
99.8054
99.8902
58.2232
2820555282083120
64.5161
dgrover-gatkINDELD16_PLUSHG002compoundhethomalt
44.4444
100.0000
28.5714
72.0000
8082020
100.0000
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.3471
99.5816
97.1429
61.6188
71437142120
95.2381
dgrover-gatkINDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
97.0995
99.3432
94.9550
83.9270
60545272820
71.4286
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
82.8549
77.7251
88.7097
61.5702
164471652120
95.2381
ckim-isaacINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
85.7762
80.3859
91.9414
59.8529
250612512220
90.9091
ckim-isaacSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.2766
92.2164
96.4310
62.9827
139811814055220
38.4615
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.6846
96.8924
98.4899
76.8920
20896720873220
62.5000
ckim-vqsrINDELD16_PLUSHG002compoundhethomalt
44.4444
100.0000
28.5714
72.5490
8082020
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1090
96.6453
99.6177
51.2288
573319957332220
90.9091
dgrover-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5314
99.8673
99.1977
62.4958
35372473536128620
6.9930
dgrover-gatkSNPtvmap_l100_m0_e0het
98.8895
99.2661
98.5157
76.1747
716953716810820
18.5185
dgrover-gatkSNPtvmap_l150_m1_e0het
98.7950
99.1650
98.4277
80.3450
688858688611020
18.1818
dgrover-gatkSNPtvmap_l150_m2_e0het
98.8320
99.2002
98.4666
81.2986
719458719211220
17.8571
dgrover-gatkSNPtvmap_l150_m2_e1het
98.8473
99.2107
98.4865
81.3098
729058728811220
17.8571
egarrison-hhgaINDEL*map_sirenhomalt
98.7934
98.6817
98.9052
79.7136
26203526202920
68.9655
egarrison-hhgaINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.0420
91.4155
98.9681
33.4097
200218820142120
95.2381
egarrison-hhgaINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
94.0960
89.8927
98.7117
42.9671
159217916092120
95.2381
egarrison-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.3344
92.7536
95.9700
83.7025
10248010244320
46.5116
egarrison-hhgaSNPtimap_l100_m0_e0*
99.3678
98.9068
99.8331
66.9886
21533238215343620
55.5556
egarrison-hhgaSNPtimap_l150_m1_e0*
99.3657
98.9448
99.7902
73.6441
19504208195044120
48.7805
egarrison-hhgaSNPtimap_l150_m2_e0*
99.3881
98.9811
99.7985
75.2011
20303209203034120
48.7805
egarrison-hhgaSNPtimap_l150_m2_e1*
99.3895
98.9866
99.7957
75.2728
20513210205134220
47.6190
anovak-vgINDEL*map_l250_m0_e0*
64.4116
67.9487
61.2245
98.1965
5325603820
52.6316
anovak-vgINDELC1_5*het
40.9055
77.7778
27.7500
90.6933
7211128920
6.9204
anovak-vgINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
57.5634
52.4590
63.7681
43.4426
3229442520
80.0000
anovak-vgINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
89.8651
88.3469
91.4365
80.2294
326433313120
64.5161
anovak-vgINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
69.9850
66.9291
73.3333
68.5864
8542883220
62.5000
anovak-vgINDELD6_15segduphet
75.5396
76.0870
75.0000
93.8242
7022782620
76.9231
anovak-vgINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
8.0617
4.6278
31.2500
60.9756
23474306620
30.3030
anovak-vgINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
28.0467
29.2683
26.9231
53.5714
1229143820
52.6316
astatham-gatkINDELD16_PLUS*homalt
99.1187
99.7045
98.5397
70.8497
1687516872520
80.0000
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.8086
99.5997
98.0299
75.0492
1244512442520
80.0000
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.8086
99.5997
98.0299
75.0492
1244512442520
80.0000
astatham-gatkSNPtimap_l125_m0_e0*
92.8568
86.9378
99.6407
77.9287
110951667110934020
50.0000
anovak-vgINDELI6_15map_l100_m2_e0homalt
63.9719
78.7879
53.8462
79.8450
267282420
83.3333
anovak-vgINDELI6_15map_l100_m2_e1homalt
63.9719
78.7879
53.8462
80.2281
267282420
83.3333
anovak-vgSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
97.9888
97.4071
98.5775
24.3272
13903713862020
100.0000
anovak-vgSNPtvmap_l150_m1_e0homalt
87.3069
78.0030
99.1307
71.3389
307886830792720
74.0741
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.8091
97.3562
98.2662
76.6111
20995720973720
54.0541
astatham-gatkINDEL*map_siren*
97.4708
96.1673
98.8100
83.5327
712628471418620
23.2558
asubramanian-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.0522
89.5197
96.8750
80.6207
615727442420
83.3333
asubramanian-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
97.8322
98.8294
96.8550
70.8320
616373619020120
9.9503
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8531
99.8195
99.8867
58.0732
2820951282123220
62.5000
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.2794
95.8165
96.7468
75.0088
710316842320
86.9565
bgallagher-sentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4306
99.8701
98.9950
61.8984
35373463536235920
5.5710
bgallagher-sentieonSNPtimap_l150_m0_e0*
98.8263
99.0968
98.5573
80.5178
779071778811420
17.5439
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4994
99.8555
99.1459
64.4153
27638402762823820
8.4034
bgallagher-sentieonSNPtvmap_l150_m1_e0het
98.5918
99.3090
97.8850
78.8267
689848689614920
13.4228
bgallagher-sentieonSNPtvmap_l150_m2_e0het
98.6238
99.3381
97.9198
79.8967
720448720215320
13.0719