PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71401-71450 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5172 | 97.8799 | 93.2660 | 69.8477 | 277 | 6 | 277 | 20 | 20 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m1_e0 | homalt | 99.8050 | 99.7216 | 99.8885 | 59.4316 | 17910 | 50 | 17910 | 20 | 20 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | segdup | * | 98.9694 | 99.5663 | 98.3796 | 89.2053 | 8495 | 37 | 8500 | 140 | 20 | 14.2857 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4050 | 99.7685 | 99.0441 | 61.4043 | 35337 | 82 | 35333 | 341 | 20 | 5.8651 | |
| jli-custom | SNP | tv | map_l100_m0_e0 | het | 98.7783 | 98.5184 | 99.0395 | 66.6140 | 7115 | 107 | 7115 | 69 | 20 | 28.9855 | |
| jmaeng-gatk | INDEL | D16_PLUS | * | homalt | 99.0018 | 99.6454 | 98.3664 | 70.1757 | 1686 | 6 | 1686 | 28 | 20 | 71.4286 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6508 | 99.5196 | 97.7970 | 74.4625 | 1243 | 6 | 1243 | 28 | 20 | 71.4286 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6508 | 99.5196 | 97.7970 | 74.4625 | 1243 | 6 | 1243 | 28 | 20 | 71.4286 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | * | 77.3663 | 73.4375 | 81.7391 | 90.2294 | 94 | 34 | 94 | 21 | 20 | 95.2381 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 82.8025 | 91.5493 | 75.5814 | 91.2779 | 65 | 6 | 65 | 21 | 20 | 95.2381 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.3100 | 99.6183 | 93.2143 | 76.1499 | 522 | 2 | 522 | 38 | 20 | 52.6316 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.9657 | 75.7143 | 94.2356 | 75.6856 | 371 | 119 | 376 | 23 | 20 | 86.9565 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7437 | 95.5319 | 97.9866 | 71.7029 | 1347 | 63 | 1314 | 27 | 20 | 74.0741 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1608 | 98.9184 | 99.4045 | 76.5307 | 6036 | 66 | 6009 | 36 | 20 | 55.5556 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | het | 85.0662 | 81.8182 | 88.5827 | 93.2602 | 594 | 132 | 675 | 87 | 20 | 22.9885 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | het | 85.2845 | 82.4607 | 88.3085 | 93.5494 | 630 | 134 | 710 | 94 | 20 | 21.2766 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | het | 85.2642 | 82.4675 | 88.2571 | 93.6289 | 635 | 135 | 714 | 95 | 20 | 21.0526 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 25.8158 | 15.0294 | 91.4439 | 71.5156 | 332 | 1877 | 342 | 32 | 20 | 62.5000 | |
| gduggal-snapvard | INDEL | * | segdup | homalt | 87.9737 | 80.1042 | 97.5580 | 91.2900 | 769 | 191 | 799 | 20 | 20 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 55.2239 | 100.0000 | 38.1443 | 82.3636 | 1 | 0 | 74 | 120 | 20 | 16.6667 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2011 | 99.6842 | 98.7226 | 58.1229 | 11049 | 35 | 11052 | 143 | 20 | 13.9860 | |
| gduggal-snapfb | SNP | * | map_l150_m1_e0 | homalt | 97.1242 | 94.8195 | 99.5437 | 79.7473 | 10689 | 584 | 10689 | 49 | 20 | 40.8163 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | homalt | 97.2134 | 94.9739 | 99.5609 | 80.8017 | 11111 | 588 | 11111 | 49 | 20 | 40.8163 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | homalt | 97.2353 | 95.0114 | 99.5658 | 80.8094 | 11237 | 590 | 11237 | 49 | 20 | 40.8163 | |
| gduggal-snapfb | SNP | ti | map_l100_m1_e0 | homalt | 98.4338 | 97.1102 | 99.7940 | 67.2966 | 17441 | 519 | 17442 | 36 | 20 | 55.5556 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | * | 80.3694 | 72.9367 | 89.4891 | 92.8627 | 1140 | 423 | 1226 | 144 | 20 | 13.8889 | |
| gduggal-snapplat | INDEL | * | map_l150_m1_e0 | * | 79.9475 | 72.5710 | 88.9932 | 94.5783 | 971 | 367 | 1043 | 129 | 20 | 15.5039 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e0 | * | 80.2426 | 73.1534 | 88.8532 | 94.8529 | 1030 | 378 | 1108 | 139 | 20 | 14.3885 | |
| gduggal-snapplat | INDEL | * | map_l150_m2_e1 | * | 80.1656 | 73.0368 | 88.8365 | 94.8724 | 1051 | 388 | 1130 | 142 | 20 | 14.0845 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | het | 79.3587 | 98.0198 | 66.6667 | 92.5863 | 198 | 4 | 262 | 131 | 20 | 15.2672 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | het | 79.3681 | 85.0000 | 74.4361 | 85.1064 | 51 | 9 | 99 | 34 | 20 | 58.8235 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | * | 72.9884 | 73.1707 | 72.8070 | 88.6680 | 60 | 22 | 83 | 31 | 20 | 64.5161 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | * | 72.3984 | 71.7647 | 73.0435 | 88.8023 | 61 | 24 | 84 | 31 | 20 | 64.5161 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 38.3333 | 68.9119 | 0 | 47 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 38.3333 | 68.7500 | 0 | 15 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | SNP | ti | map_l250_m0_e0 | * | 79.9224 | 92.7007 | 70.2401 | 94.4256 | 1270 | 100 | 1258 | 533 | 20 | 3.7524 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | * | 89.2989 | 94.1634 | 84.9123 | 96.4917 | 484 | 30 | 484 | 86 | 20 | 23.2558 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 38.2166 | 24.5902 | 85.7143 | 80.9783 | 120 | 368 | 120 | 20 | 20 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 67.0927 | 72.4138 | 62.5000 | 88.2086 | 63 | 24 | 65 | 39 | 20 | 51.2821 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 72.5832 | 98.0769 | 57.6087 | 86.0395 | 51 | 1 | 53 | 39 | 20 | 51.2821 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m1_e0 | * | 90.5611 | 95.6764 | 85.9649 | 90.8486 | 686 | 31 | 686 | 112 | 20 | 17.8571 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | het | 89.7345 | 98.6381 | 82.3052 | 92.4436 | 507 | 7 | 507 | 109 | 20 | 18.3486 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6190 | 99.4381 | 99.8005 | 49.8273 | 14687 | 83 | 15511 | 31 | 20 | 64.5161 | |
| eyeh-varpipe | INDEL | D1_5 | segdup | homalt | 97.2973 | 100.0000 | 94.7368 | 94.2878 | 359 | 0 | 378 | 21 | 20 | 95.2381 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 69.3912 | 74.4186 | 65.0000 | 63.6364 | 32 | 11 | 39 | 21 | 20 | 95.2381 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 19.0780 | 10.6557 | 91.0204 | 63.7574 | 182 | 1526 | 223 | 22 | 20 | 90.9091 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 11.8946 | 6.7961 | 47.6190 | 65.8537 | 14 | 192 | 20 | 22 | 20 | 90.9091 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 31.0781 | 20.3704 | 65.5172 | 56.3910 | 22 | 86 | 38 | 20 | 20 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.7316 | 95.9538 | 91.6100 | 65.6542 | 332 | 14 | 404 | 37 | 20 | 54.0541 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.8745 | 84.4894 | 98.3036 | 44.9837 | 6809 | 1250 | 1159 | 20 | 20 | 100.0000 | |