PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71251-71300 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.0612 | 88.8224 | 97.7248 | 55.9006 | 890 | 112 | 902 | 21 | 19 | 90.4762 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.4844 | 97.4321 | 99.5596 | 48.5952 | 1328 | 35 | 4973 | 22 | 19 | 86.3636 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1207 | 98.7596 | 99.4845 | 63.9164 | 4777 | 60 | 4825 | 25 | 19 | 76.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.3555 | 99.2863 | 97.4421 | 79.1072 | 14467 | 104 | 14476 | 380 | 19 | 5.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.3555 | 99.2863 | 97.4421 | 79.1072 | 14467 | 104 | 14476 | 380 | 19 | 5.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 21.6981 | 90.8066 | 0 | 1 | 23 | 83 | 19 | 22.8916 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.5926 | 94.7867 | 90.4977 | 51.4286 | 200 | 11 | 200 | 21 | 19 | 90.4762 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 72.3508 | 65.5602 | 80.7107 | 93.7629 | 316 | 166 | 318 | 76 | 19 | 25.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 55.7377 | 70.8333 | 45.9459 | 88.1029 | 17 | 7 | 17 | 20 | 19 | 95.0000 | |
| ciseli-custom | INDEL | I16_PLUS | HG002complexvar | het | 19.4609 | 11.4286 | 65.4867 | 81.3223 | 76 | 589 | 74 | 39 | 19 | 48.7179 | |
| ciseli-custom | INDEL | I1_5 | func_cds | * | 86.4865 | 88.8889 | 84.2105 | 28.0303 | 160 | 20 | 160 | 30 | 19 | 63.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 49.9618 | 35.4839 | 84.3972 | 87.4219 | 121 | 220 | 119 | 22 | 19 | 86.3636 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 50.0650 | 35.5685 | 84.5070 | 87.6843 | 122 | 221 | 120 | 22 | 19 | 86.3636 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 41.7093 | 29.6774 | 70.1493 | 82.9517 | 46 | 109 | 47 | 20 | 19 | 95.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.9495 | 100.0000 | 90.3846 | 67.5000 | 188 | 0 | 188 | 20 | 19 | 95.0000 | |
| ckim-gatk | SNP | ti | map_l150_m0_e0 | * | 72.8820 | 58.1733 | 97.5459 | 92.0553 | 4573 | 3288 | 4571 | 115 | 19 | 16.5217 | |
| ckim-gatk | SNP | tv | * | homalt | 99.5305 | 99.0738 | 99.9914 | 20.3623 | 373630 | 3493 | 373616 | 32 | 19 | 59.3750 | |
| ckim-gatk | SNP | tv | HG002complexvar | het | 99.7094 | 99.4639 | 99.9560 | 22.1876 | 149923 | 808 | 149845 | 66 | 19 | 28.7879 | |
| ckim-dragen | SNP | * | map_l125_m0_e0 | homalt | 99.4476 | 99.2253 | 99.6709 | 64.2590 | 6660 | 52 | 6663 | 22 | 19 | 86.3636 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | homalt | 99.6288 | 99.3708 | 99.8881 | 54.6776 | 17847 | 113 | 17852 | 20 | 19 | 95.0000 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | * | 97.3484 | 97.8435 | 96.8583 | 89.6841 | 4900 | 108 | 4902 | 159 | 19 | 11.9497 | |
| cchapple-custom | INDEL | * | map_l125_m1_e0 | het | 94.5817 | 96.3296 | 92.8962 | 87.3662 | 1286 | 49 | 1360 | 104 | 19 | 18.2692 | |
| cchapple-custom | INDEL | * | map_l125_m2_e0 | het | 94.6558 | 96.3336 | 93.0355 | 88.2941 | 1340 | 51 | 1416 | 106 | 19 | 17.9245 | |
| cchapple-custom | INDEL | * | map_l125_m2_e1 | het | 94.7170 | 96.3778 | 93.1124 | 88.4024 | 1357 | 51 | 1433 | 106 | 19 | 17.9245 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3472 | 95.8165 | 96.8839 | 75.3835 | 710 | 31 | 684 | 22 | 19 | 86.3636 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 82.8484 | 78.1915 | 88.0952 | 60.0000 | 147 | 41 | 148 | 20 | 19 | 95.0000 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.9113 | 89.3360 | 96.7846 | 77.0025 | 6149 | 734 | 6291 | 209 | 19 | 9.0909 | |
| ckim-isaac | SNP | ti | HG002compoundhet | het | 88.4015 | 80.2104 | 98.4558 | 36.9008 | 7624 | 1881 | 7906 | 124 | 19 | 15.3226 | |
| ckim-vqsr | INDEL | * | map_siren | * | 97.9969 | 97.3279 | 98.6752 | 85.5636 | 7212 | 198 | 7225 | 97 | 19 | 19.5876 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.4848 | 99.7211 | 97.2789 | 61.7387 | 715 | 2 | 715 | 20 | 19 | 95.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2746 | 95.6815 | 96.8750 | 75.2809 | 709 | 32 | 682 | 22 | 19 | 86.3636 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.8621 | 98.2332 | 93.6027 | 69.8477 | 278 | 5 | 278 | 19 | 19 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.9495 | 100.0000 | 90.3846 | 67.5000 | 188 | 0 | 188 | 20 | 19 | 95.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.9555 | 98.7078 | 99.2044 | 76.2044 | 19326 | 253 | 19326 | 155 | 19 | 12.2581 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.9555 | 98.7078 | 99.2044 | 76.2044 | 19326 | 253 | 19326 | 155 | 19 | 12.2581 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.5603 | 97.8355 | 93.3884 | 59.3960 | 452 | 10 | 452 | 32 | 19 | 59.3750 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.4679 | 70.6667 | 70.2703 | 56.2130 | 53 | 22 | 52 | 22 | 19 | 86.3636 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 51.0638 | 92.3077 | 35.2941 | 68.5185 | 12 | 1 | 12 | 22 | 19 | 86.3636 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.2797 | 92.2197 | 90.3587 | 46.2002 | 403 | 34 | 403 | 43 | 19 | 44.1860 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | het | 94.1776 | 98.5714 | 90.1587 | 84.4291 | 276 | 4 | 284 | 31 | 19 | 61.2903 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.6301 | 80.4167 | 91.5663 | 79.3430 | 386 | 94 | 380 | 35 | 19 | 54.2857 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.6854 | 91.9137 | 95.5267 | 69.7908 | 682 | 60 | 662 | 31 | 19 | 61.2903 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.3317 | 95.2681 | 97.4194 | 82.1360 | 906 | 45 | 906 | 24 | 19 | 79.1667 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3832 | 99.0868 | 99.6813 | 36.6712 | 10634 | 98 | 10635 | 34 | 19 | 55.8824 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7264 | 98.4342 | 99.0203 | 74.1270 | 8990 | 143 | 8995 | 89 | 19 | 21.3483 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.4476 | 97.8775 | 99.0244 | 81.2649 | 4058 | 88 | 4060 | 40 | 19 | 47.5000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7264 | 98.4342 | 99.0203 | 74.1270 | 8990 | 143 | 8995 | 89 | 19 | 21.3483 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | * | 99.4963 | 99.1715 | 99.8233 | 63.2033 | 24298 | 203 | 24298 | 43 | 19 | 44.1860 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | * | 99.4951 | 99.1851 | 99.8071 | 65.1309 | 24829 | 204 | 24829 | 48 | 19 | 39.5833 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | * | 99.4981 | 99.1892 | 99.8090 | 65.1604 | 25078 | 205 | 25078 | 48 | 19 | 39.5833 | |