PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71201-71250 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | homalt | 59.0164 | 49.5413 | 72.9730 | 91.3043 | 54 | 55 | 54 | 20 | 19 | 95.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.6709 | 97.2719 | 98.0732 | 76.6321 | 1034 | 29 | 1018 | 20 | 19 | 95.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 56.5217 | 100.0000 | 39.3939 | 54.1667 | 13 | 0 | 13 | 20 | 19 | 95.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | het | 76.7833 | 64.0379 | 95.8629 | 77.1351 | 812 | 456 | 811 | 35 | 19 | 54.2857 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002complexvar | * | 94.7987 | 91.4790 | 98.3685 | 55.6259 | 1503 | 140 | 1447 | 24 | 19 | 79.1667 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5354 | 97.7762 | 99.3066 | 59.4807 | 8222 | 187 | 8306 | 58 | 19 | 32.7586 | |
| ltrigg-rtg2 | INDEL | I6_15 | * | hetalt | 97.3347 | 95.0298 | 99.7542 | 44.1554 | 8126 | 425 | 8116 | 20 | 19 | 95.0000 | |
| ltrigg-rtg2 | SNP | * | HG002compoundhet | * | 99.3639 | 98.9737 | 99.7572 | 37.9767 | 25557 | 265 | 25473 | 62 | 19 | 30.6452 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4718 | 99.0131 | 99.9347 | 60.3688 | 55082 | 549 | 55072 | 36 | 19 | 52.7778 | |
| astatham-gatk | SNP | * | map_l100_m1_e0 | homalt | 99.6081 | 99.3075 | 99.9106 | 57.8259 | 26816 | 187 | 26816 | 24 | 19 | 79.1667 | |
| astatham-gatk | SNP | * | map_l100_m2_e0 | homalt | 99.6137 | 99.3169 | 99.9123 | 60.3292 | 27335 | 188 | 27335 | 24 | 19 | 79.1667 | |
| astatham-gatk | SNP | * | map_l100_m2_e1 | homalt | 99.6157 | 99.3200 | 99.9131 | 60.3111 | 27607 | 189 | 27607 | 24 | 19 | 79.1667 | |
| astatham-gatk | SNP | * | map_l250_m1_e0 | * | 92.7803 | 87.1919 | 99.1341 | 90.2158 | 6297 | 925 | 6297 | 55 | 19 | 34.5455 | |
| astatham-gatk | SNP | * | map_l250_m2_e0 | * | 92.6519 | 86.9119 | 99.2038 | 90.7351 | 6853 | 1032 | 6853 | 55 | 19 | 34.5455 | |
| astatham-gatk | SNP | * | map_l250_m2_e1 | * | 92.6875 | 86.9663 | 99.2144 | 90.7902 | 6946 | 1041 | 6946 | 55 | 19 | 34.5455 | |
| astatham-gatk | SNP | ti | map_l125_m1_e0 | het | 85.4533 | 74.7728 | 99.6933 | 79.6242 | 13658 | 4608 | 13654 | 42 | 19 | 45.2381 | |
| astatham-gatk | SNP | ti | map_l125_m2_e0 | het | 85.6054 | 75.0000 | 99.7041 | 80.6061 | 14157 | 4719 | 14153 | 42 | 19 | 45.2381 | |
| astatham-gatk | SNP | ti | map_l125_m2_e1 | het | 85.6126 | 75.0092 | 99.7074 | 80.6356 | 14317 | 4770 | 14313 | 42 | 19 | 45.2381 | |
| astatham-gatk | SNP | ti | map_l150_m2_e0 | het | 86.0268 | 75.7084 | 99.6015 | 83.8910 | 9752 | 3129 | 9748 | 39 | 19 | 48.7179 | |
| astatham-gatk | SNP | ti | map_l150_m2_e1 | het | 86.0111 | 75.6819 | 99.6055 | 83.9600 | 9850 | 3165 | 9846 | 39 | 19 | 48.7179 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5134 | 94.8347 | 94.1942 | 82.6140 | 918 | 50 | 941 | 58 | 19 | 32.7586 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | homalt | 64.7111 | 78.7879 | 54.9020 | 77.9221 | 26 | 7 | 28 | 23 | 19 | 82.6087 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8600 | 99.6324 | 98.0995 | 67.6806 | 1084 | 4 | 1084 | 21 | 19 | 90.4762 | |
| astatham-gatk | INDEL | D6_15 | HG002complexvar | het | 99.0140 | 98.8462 | 99.1825 | 59.3945 | 3084 | 36 | 3033 | 25 | 19 | 76.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6716 | 99.6463 | 99.6968 | 50.6032 | 11833 | 42 | 11838 | 36 | 19 | 52.7778 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | * | 98.5526 | 98.8862 | 98.2213 | 89.0457 | 4528 | 51 | 4528 | 82 | 19 | 23.1707 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | * | 98.6664 | 98.9816 | 98.3532 | 89.5470 | 4957 | 51 | 4957 | 83 | 19 | 22.8916 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | * | 98.6646 | 98.9756 | 98.3555 | 89.6132 | 5024 | 52 | 5024 | 84 | 19 | 22.6190 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | * | 98.6421 | 99.1555 | 98.1340 | 76.7581 | 6575 | 56 | 6574 | 125 | 19 | 15.2000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 91.9411 | 87.7264 | 96.5812 | 72.9667 | 436 | 61 | 565 | 20 | 19 | 95.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.8703 | 95.1801 | 98.6216 | 73.1527 | 1876 | 95 | 2218 | 31 | 19 | 61.2903 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 96.2350 | 95.0135 | 97.4884 | 66.2374 | 705 | 37 | 1048 | 27 | 19 | 70.3704 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.2829 | 94.9045 | 97.7021 | 68.8472 | 894 | 48 | 1233 | 29 | 19 | 65.5172 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.8703 | 95.1801 | 98.6216 | 73.1527 | 1876 | 95 | 2218 | 31 | 19 | 61.2903 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4310 | 98.7964 | 96.1027 | 79.7737 | 10671 | 130 | 10702 | 434 | 19 | 4.3779 | |
| anovak-vg | INDEL | * | func_cds | het | 74.7761 | 69.6262 | 80.7487 | 43.8438 | 149 | 65 | 151 | 36 | 19 | 52.7778 | |
| anovak-vg | INDEL | C1_5 | HG002complexvar | * | 63.2248 | 71.4286 | 56.7114 | 83.4812 | 5 | 2 | 169 | 129 | 19 | 14.7287 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 66.4196 | 55.6522 | 82.3529 | 58.1967 | 128 | 102 | 126 | 27 | 19 | 70.3704 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 21.8978 | 16.8539 | 31.2500 | 56.7568 | 15 | 74 | 15 | 33 | 19 | 57.5758 | |
| ciseli-custom | SNP | * | * | hetalt | 87.9067 | 82.2044 | 94.4591 | 39.6977 | 716 | 155 | 716 | 42 | 19 | 45.2381 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.4900 | 97.9500 | 77.4308 | 59.1746 | 2389 | 50 | 2405 | 701 | 19 | 2.7104 | |
| ciseli-custom | SNP | ti | segdup | het | 96.4948 | 98.3957 | 94.6659 | 91.6122 | 11837 | 193 | 11802 | 665 | 19 | 2.8571 | |
| ciseli-custom | SNP | tv | * | hetalt | 87.9067 | 82.2044 | 94.4591 | 39.6977 | 716 | 155 | 716 | 42 | 19 | 45.2381 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4490 | 98.2824 | 80.4044 | 77.2309 | 515 | 9 | 517 | 126 | 19 | 15.0794 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 81.5701 | 97.8381 | 69.9407 | 68.1937 | 2127 | 47 | 2122 | 912 | 19 | 2.0833 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8088 | 99.7806 | 99.8371 | 58.7309 | 28198 | 62 | 28192 | 46 | 19 | 41.3043 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | * | 96.9560 | 97.3229 | 96.5919 | 86.1888 | 3490 | 96 | 3486 | 123 | 19 | 15.4472 | |
| ckim-dragen | INDEL | * | map_l100_m2_e0 | * | 96.9907 | 97.3734 | 96.6111 | 87.1158 | 3596 | 97 | 3592 | 126 | 19 | 15.0794 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.4848 | 99.7211 | 97.2789 | 61.7387 | 715 | 2 | 715 | 20 | 19 | 95.0000 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.4154 | 95.9514 | 96.8839 | 75.2281 | 711 | 30 | 684 | 22 | 19 | 86.3636 | |