PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
71051-71100 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | het | 79.3149 | 91.4894 | 70.0000 | 89.2473 | 43 | 4 | 70 | 30 | 19 | 63.3333 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.0796 | 97.3480 | 87.3522 | 68.3694 | 6020 | 164 | 5912 | 856 | 19 | 2.2196 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.3822 | 94.6628 | 98.1651 | 78.9575 | 2288 | 129 | 2247 | 42 | 19 | 45.2381 | |
| gduggal-snapvard | SNP | ti | map_l125_m1_e0 | homalt | 97.8107 | 95.9258 | 99.7712 | 66.1153 | 10595 | 450 | 10464 | 24 | 19 | 79.1667 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e0 | homalt | 97.8264 | 95.9500 | 99.7776 | 68.4862 | 10898 | 460 | 10766 | 24 | 19 | 79.1667 | |
| gduggal-snapvard | SNP | ti | map_l125_m2_e1 | homalt | 97.8366 | 95.9679 | 99.7796 | 68.5265 | 10996 | 462 | 10863 | 24 | 19 | 79.1667 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 50.1596 | 42.9630 | 60.2524 | 58.3990 | 58 | 77 | 191 | 126 | 19 | 15.0794 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.6032 | 52.3810 | 95.2970 | 70.8303 | 385 | 350 | 385 | 19 | 19 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.3149 | 68.8830 | 96.2963 | 71.1384 | 518 | 234 | 520 | 20 | 19 | 95.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.0896 | 87.2376 | 99.7831 | 59.6058 | 12885 | 1885 | 12884 | 28 | 19 | 67.8571 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | het | 99.0514 | 99.6226 | 98.4868 | 69.7302 | 29829 | 113 | 29158 | 448 | 19 | 4.2411 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | het | 99.0330 | 99.6245 | 98.4486 | 71.1792 | 30507 | 115 | 29825 | 470 | 19 | 4.0426 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | het | 99.0385 | 99.6286 | 98.4553 | 71.2000 | 30845 | 115 | 30148 | 473 | 19 | 4.0169 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.7882 | 96.6046 | 73.9742 | 88.0348 | 882 | 31 | 631 | 222 | 19 | 8.5586 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.1991 | 98.2644 | 96.1566 | 80.7160 | 1472 | 26 | 1326 | 53 | 19 | 35.8491 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 88.8144 | 80.8349 | 98.5418 | 47.2042 | 426 | 101 | 1284 | 19 | 19 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 80.7025 | 72.6989 | 90.6863 | 50.9615 | 466 | 175 | 185 | 19 | 19 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l100_m1_e0 | homalt | 99.5971 | 99.3186 | 99.8771 | 62.3452 | 26819 | 184 | 26819 | 33 | 19 | 57.5758 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 73.9336 | 100.0000 | 58.6466 | 95.6607 | 1 | 0 | 78 | 55 | 19 | 34.5455 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | * | 92.4713 | 96.7831 | 88.5274 | 88.5445 | 1053 | 35 | 1034 | 134 | 19 | 14.1791 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | * | 92.6484 | 96.6754 | 88.9435 | 89.1467 | 1105 | 38 | 1086 | 135 | 19 | 14.0741 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | het | 94.3995 | 98.1481 | 90.9266 | 90.6464 | 477 | 9 | 471 | 47 | 19 | 40.4255 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | * | 71.7489 | 70.1754 | 73.3945 | 86.6585 | 80 | 34 | 80 | 29 | 19 | 65.5172 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | het | 78.3217 | 94.9153 | 66.6667 | 88.3978 | 56 | 3 | 56 | 28 | 19 | 67.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | * | 72.2467 | 70.6897 | 73.8739 | 87.7212 | 82 | 34 | 82 | 29 | 19 | 65.5172 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | het | 78.9116 | 95.0820 | 67.4419 | 89.1960 | 58 | 3 | 58 | 28 | 19 | 67.8571 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e1 | * | 72.2467 | 70.6897 | 73.8739 | 87.9870 | 82 | 34 | 82 | 29 | 19 | 65.5172 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e1 | het | 78.9116 | 95.0820 | 67.4419 | 89.4349 | 58 | 3 | 58 | 28 | 19 | 67.8571 | |
| gduggal-bwavard | SNP | * | HG002compoundhet | homalt | 91.3621 | 84.3072 | 99.7055 | 35.4356 | 9090 | 1692 | 7788 | 23 | 19 | 82.6087 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2853 | 97.2759 | 95.3147 | 68.9687 | 4178 | 117 | 4150 | 204 | 19 | 9.3137 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.9992 | 97.3939 | 92.7195 | 74.6356 | 2616 | 70 | 2598 | 204 | 19 | 9.3137 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0250 | 97.6820 | 98.3704 | 46.6267 | 4509 | 107 | 4467 | 74 | 19 | 25.6757 | |
| gduggal-bwavard | SNP | tv | segdup | homalt | 98.3926 | 97.4676 | 99.3354 | 90.2442 | 3156 | 82 | 3139 | 21 | 19 | 90.4762 | |
| gduggal-bwaplat | INDEL | I16_PLUS | * | hetalt | 78.3575 | 65.0620 | 98.4827 | 54.0810 | 1365 | 733 | 1363 | 21 | 19 | 90.4762 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 62.3434 | 46.3628 | 95.1351 | 82.5307 | 529 | 612 | 528 | 27 | 19 | 70.3704 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 77.7475 | 64.0656 | 98.8601 | 79.0638 | 2266 | 1271 | 2255 | 26 | 19 | 73.0769 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 72.3381 | 57.0859 | 98.7121 | 81.9630 | 2147 | 1614 | 2146 | 28 | 19 | 67.8571 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 72.3381 | 57.0859 | 98.7121 | 81.9630 | 2147 | 1614 | 2146 | 28 | 19 | 67.8571 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | het | 67.0117 | 50.6238 | 99.0887 | 93.0436 | 6411 | 6253 | 6415 | 59 | 19 | 32.2034 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.3264 | 87.6955 | 99.7299 | 56.2023 | 8859 | 1243 | 8863 | 24 | 19 | 79.1667 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 87.7025 | 78.2609 | 99.7349 | 69.6723 | 7902 | 2195 | 7900 | 21 | 19 | 90.4762 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 82.8907 | 73.1218 | 95.6723 | 82.2308 | 2258 | 830 | 2277 | 103 | 19 | 18.4466 | |
| gduggal-bwaplat | SNP | tv | map_l100_m1_e0 | * | 80.7967 | 68.0462 | 99.4275 | 83.4681 | 16672 | 7829 | 16673 | 96 | 19 | 19.7917 | |
| gduggal-bwaplat | SNP | tv | map_l100_m1_e0 | het | 84.9313 | 74.2687 | 99.1687 | 85.9377 | 11450 | 3967 | 11452 | 96 | 19 | 19.7917 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | * | 81.2147 | 68.6414 | 99.4272 | 84.5184 | 17183 | 7850 | 17184 | 99 | 19 | 19.1919 | |
| gduggal-bwaplat | SNP | tv | map_l100_m2_e0 | het | 85.2808 | 74.8051 | 99.1683 | 86.8061 | 11802 | 3975 | 11804 | 99 | 19 | 19.1919 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 54.2373 | 95.3978 | 0 | 0 | 32 | 27 | 19 | 70.3704 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 90.6416 | 91.6129 | 89.6907 | 78.8210 | 142 | 13 | 174 | 20 | 19 | 95.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 27.1199 | 15.9420 | 90.7489 | 71.4824 | 143 | 754 | 206 | 21 | 19 | 90.4762 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | * | 97.6374 | 97.4329 | 97.8428 | 85.0133 | 835 | 22 | 1270 | 28 | 19 | 67.8571 | |