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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
70701-70750 / 86044 show all
hfeng-pmm1INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.4871
99.6937
97.3094
71.3122
65126511817
94.4444
hfeng-pmm1SNP*map_l100_m1_e0homalt
99.8556
99.8408
99.8703
60.9594
2696043269603517
48.5714
hfeng-pmm1SNP*map_l100_m2_e0homalt
99.8583
99.8438
99.8728
63.3749
2748043274803517
48.5714
hfeng-pmm1SNP*map_l100_m2_e1homalt
99.8597
99.8453
99.8740
63.3660
2775343277533517
48.5714
hfeng-pmm1SNP*map_l250_m2_e0*
98.8758
98.7191
99.0331
88.4730
778410177847617
22.3684
hfeng-pmm1SNP*map_l250_m2_e1*
98.8775
98.7104
99.0452
88.5497
788410378847617
22.3684
hfeng-pmm1SNPtimap_l150_m1_e0het
99.0951
98.7227
99.4704
74.9167
12212158122086517
26.1538
hfeng-pmm1SNPtimap_l150_m2_e0het
99.1156
98.7579
99.4759
76.0299
12721160127176717
25.3731
hfeng-pmm1SNPtimap_l150_m2_e1het
99.1170
98.7630
99.4736
76.1158
12854161128506817
25.0000
hfeng-pmm1SNPtvmap_l100_m1_e0*
99.6055
99.4531
99.7584
64.1006
24367134243635917
28.8136
hfeng-pmm1SNPtvmap_l100_m2_e0*
99.6119
99.4647
99.7596
65.8235
24899134248956017
28.3333
hfeng-pmm1SNPtvmap_l100_m2_e1*
99.6118
99.4660
99.7580
65.8552
25148135251446117
27.8689
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_quadTR_51to200het
94.9545
92.8719
97.1326
81.0032
899698132417
70.8333
hfeng-pmm2INDEL*map_siren*
98.8132
98.7719
98.8544
81.7102
73199173358517
20.0000
hfeng-pmm3INDELD6_15HG002complexvarhet
95.8678
92.7244
99.2318
57.2218
289322728422217
77.2727
hfeng-pmm3SNP*map_l100_m1_e0homalt
99.8518
99.8334
99.8703
60.8633
2695845269583517
48.5714
hfeng-pmm3SNP*map_l100_m2_e0homalt
99.8546
99.8365
99.8728
63.2901
2747845274783517
48.5714
hfeng-pmm3SNP*map_l100_m2_e1homalt
99.8561
99.8381
99.8740
63.2761
2775145277513517
48.5714
jlack-gatkINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
89.0056
80.5701
99.4139
40.3057
308174332231917
89.4737
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.9617
96.7357
97.1888
78.6888
12154112103517
48.5714
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7395
99.7766
99.7024
56.2348
1473733147394417
38.6364
jlack-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
95.5224
100.0000
91.4286
46.0154
19201921817
94.4444
jlack-gatkINDELI16_PLUSHG002compoundhethet
61.9313
91.4894
46.8085
90.8382
434222517
68.0000
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
97.4894
96.4286
98.5739
66.0205
17286417282517
68.0000
hfeng-pmm1INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50het
94.7203
94.2529
95.1923
81.7287
574354952517
68.0000
hfeng-pmm1INDELD6_15HG002complexvarhet
95.9519
92.8205
99.3019
57.0271
289622428452017
85.0000
hfeng-pmm1INDELI1_5HG002complexvarhomalt
99.8625
99.8736
99.8514
52.0252
1343117134352017
85.0000
hfeng-pmm1INDELI1_5lowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.7305
89.6851
98.1581
66.4808
165219016523117
54.8387
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.8835
99.1132
98.6549
87.3860
23472123473217
53.1250
jli-customINDEL*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
94.5613
90.0889
99.5008
36.1205
344537935881817
94.4444
jli-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8026
99.8847
99.7206
56.2796
6065760681717
100.0000
jli-customINDEL*map_siren*
98.8895
98.5020
99.2800
80.4395
729911173085317
32.0755
hfeng-pmm2SNPtimap_l125_m0_e0*
99.1282
99.3496
98.9077
76.2142
12679831267714017
12.1429
hfeng-pmm2SNPtvmap_l100_m1_e0*
99.4801
99.5919
99.3687
67.2876
244011002439715517
10.9677
hfeng-pmm2SNPtvmap_l100_m2_e0*
99.4872
99.6005
99.3742
68.8945
249331002492915717
10.8280
hfeng-pmm2SNPtvmap_l100_m2_e1*
99.4903
99.6045
99.3764
68.9155
251831002517915817
10.7595
hfeng-pmm2INDELD16_PLUSlowcmp_SimpleRepeat_diTR_11to50*
97.4316
96.3170
98.5722
66.0922
17266617262517
68.0000
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.2579
87.4251
97.6562
63.9582
8761268752117
80.9524
hfeng-pmm2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.0092
98.6133
97.4125
67.2319
64096401717
100.0000
hfeng-pmm2INDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.5639
99.8469
97.3134
72.4846
65216521817
94.4444
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0051
98.4010
99.6166
36.8952
46777646771817
94.4444
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7968
99.7563
99.8374
54.8306
1473436147362417
70.8333
rpoplin-dv42INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
86.4388
78.8732
95.6098
71.0452
3921053921817
94.4444
rpoplin-dv42INDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
89.0110
82.5328
96.5928
74.6983
5671205672017
85.0000
rpoplin-dv42SNP*map_l150_m0_e0homalt
98.7551
97.9702
99.5527
75.0450
40068340061817
94.4444
rpoplin-dv42SNPtimap_l100_m0_e0homalt
99.4451
99.1253
99.7670
62.0330
77066877061817
94.4444
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.8491
99.8406
99.8576
65.2848
1754028175272517
68.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.5504
99.5402
99.5606
75.8969
1450467145026417
26.5625
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
93.5030
90.1484
97.1168
71.5703
668736401917
89.4737
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.3872
99.0063
99.7710
48.5556
11757118117622717
62.9630