PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70651-70700 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8126 | 99.7437 | 99.8815 | 55.8039 | 25294 | 65 | 25297 | 30 | 17 | 56.6667 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.4718 | 96.8061 | 98.1467 | 52.3196 | 1273 | 42 | 1271 | 24 | 17 | 70.8333 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.5329 | 95.0920 | 98.0180 | 79.6517 | 1085 | 56 | 1088 | 22 | 17 | 77.2727 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5044 | 99.4538 | 99.5551 | 80.0137 | 10742 | 59 | 10742 | 48 | 17 | 35.4167 | |
| ckim-gatk | SNP | tv | HG002compoundhet | * | 99.2966 | 98.8905 | 99.7061 | 49.4688 | 8824 | 99 | 8821 | 26 | 17 | 65.3846 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | * | 88.1419 | 80.3355 | 97.6286 | 80.4620 | 19683 | 4818 | 19679 | 478 | 17 | 3.5565 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | * | 88.3659 | 80.7254 | 97.6039 | 81.5961 | 20208 | 4825 | 20204 | 496 | 17 | 3.4274 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4609 | 80.8686 | 97.6264 | 81.5863 | 20446 | 4837 | 20442 | 497 | 17 | 3.4205 | |
| ciseli-custom | SNP | ti | * | hetalt | 87.1087 | 81.2715 | 93.8492 | 39.4958 | 473 | 109 | 473 | 31 | 17 | 54.8387 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8050 | 99.7787 | 99.8314 | 54.7146 | 11271 | 25 | 11248 | 19 | 17 | 89.4737 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4613 | 99.2277 | 99.6960 | 43.2493 | 6681 | 52 | 7543 | 23 | 17 | 73.9130 | |
| cchapple-custom | INDEL | * | map_l100_m0_e0 | het | 94.3799 | 96.1802 | 92.6457 | 86.7828 | 982 | 39 | 1033 | 82 | 17 | 20.7317 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | * | 95.3280 | 96.1779 | 94.4929 | 89.8327 | 1384 | 55 | 1407 | 82 | 17 | 20.7317 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0943 | 97.2973 | 92.9889 | 49.2509 | 252 | 7 | 252 | 19 | 17 | 89.4737 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 76.7811 | 70.7276 | 83.9679 | 91.1431 | 418 | 173 | 419 | 80 | 17 | 21.2500 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 75.3468 | 98.8372 | 60.8781 | 62.7229 | 2465 | 29 | 2482 | 1595 | 17 | 1.0658 | |
| gduggal-snapfb | SNP | * | segdup | homalt | 99.6002 | 99.7114 | 99.4891 | 90.4625 | 10712 | 31 | 10711 | 55 | 17 | 30.9091 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.2657 | 99.6737 | 96.8970 | 47.8485 | 2749 | 9 | 2748 | 88 | 17 | 19.3182 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 43.5514 | 40.6847 | 46.8526 | 86.1967 | 511 | 745 | 588 | 667 | 17 | 2.5487 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 56.9333 | 42.2920 | 87.0801 | 78.6542 | 310 | 423 | 337 | 50 | 17 | 34.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.5107 | 97.2293 | 99.8263 | 49.4968 | 9896 | 282 | 9768 | 17 | 17 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | * | 79.8265 | 97.6608 | 67.5000 | 94.8077 | 167 | 4 | 216 | 104 | 17 | 16.3462 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | het | 74.0028 | 99.1736 | 59.0226 | 95.4854 | 120 | 1 | 157 | 109 | 17 | 15.5963 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | het | 73.8307 | 99.1803 | 58.8015 | 95.5890 | 121 | 1 | 157 | 110 | 17 | 15.4545 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 20.7177 | 14.5161 | 36.1702 | 74.1758 | 27 | 159 | 17 | 30 | 17 | 56.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 28.0124 | 22.8571 | 36.1702 | 73.8889 | 8 | 27 | 17 | 30 | 17 | 56.6667 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 35.8318 | 82.3529 | 22.8972 | 89.5355 | 182 | 39 | 196 | 660 | 17 | 2.5758 | |
| ghariani-varprowl | INDEL | * | segdup | homalt | 93.7217 | 90.2083 | 97.5197 | 91.8211 | 866 | 94 | 865 | 22 | 17 | 77.2727 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 58.1470 | 86.6667 | 43.7500 | 77.4648 | 13 | 2 | 14 | 18 | 17 | 94.4444 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 94.1757 | 98.1481 | 90.5123 | 91.5531 | 477 | 9 | 477 | 50 | 17 | 34.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 77.6739 | 95.6522 | 65.3846 | 90.8852 | 66 | 3 | 68 | 36 | 17 | 47.2222 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | * | 94.5118 | 96.7883 | 92.3398 | 94.5924 | 1326 | 44 | 1326 | 110 | 17 | 15.4545 | |
| gduggal-snapplat | SNP | * | segdup | het | 98.6817 | 98.5044 | 98.8598 | 94.8279 | 17058 | 259 | 17080 | 197 | 17 | 8.6294 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 89.5432 | 89.7781 | 89.3096 | 71.8319 | 3601 | 410 | 3609 | 432 | 17 | 3.9352 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 69.4882 | 58.7467 | 85.0365 | 91.8258 | 225 | 158 | 233 | 41 | 17 | 41.4634 | |
| gduggal-snapplat | SNP | ti | segdup | * | 99.0792 | 98.8483 | 99.3111 | 92.8755 | 19312 | 225 | 19317 | 134 | 17 | 12.6866 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 1.8576 | 0.9740 | 20.0000 | 60.0000 | 6 | 610 | 6 | 24 | 17 | 70.8333 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 3.3520 | 1.8293 | 20.0000 | 59.4595 | 3 | 161 | 6 | 24 | 17 | 70.8333 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 59.1474 | 45.9330 | 83.0357 | 59.5668 | 96 | 113 | 93 | 19 | 17 | 89.4737 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | * | 82.8291 | 73.2809 | 95.2381 | 76.5845 | 373 | 136 | 380 | 19 | 17 | 89.4737 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 36.9757 | 51.3011 | 28.9044 | 74.0000 | 138 | 131 | 124 | 305 | 17 | 5.5738 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | het | 94.9188 | 96.2522 | 93.6219 | 81.5720 | 1618 | 63 | 1644 | 112 | 17 | 15.1786 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 52.5642 | 54.2299 | 50.9978 | 81.1743 | 500 | 422 | 690 | 663 | 17 | 2.5641 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 23.8140 | 14.0000 | 79.6460 | 57.8358 | 91 | 559 | 90 | 23 | 17 | 73.9130 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | * | 84.4218 | 78.4473 | 91.3813 | 92.4805 | 677 | 186 | 774 | 73 | 17 | 23.2877 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | het | 83.5667 | 80.4979 | 86.8787 | 94.5219 | 388 | 94 | 437 | 66 | 17 | 25.7576 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | het | 83.8926 | 81.3230 | 86.6300 | 94.6747 | 418 | 96 | 473 | 73 | 17 | 23.2877 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | het | 83.7221 | 81.0345 | 86.5942 | 94.7283 | 423 | 99 | 478 | 74 | 17 | 22.9730 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 26.5124 | 15.4269 | 94.2105 | 53.3742 | 365 | 2001 | 358 | 22 | 17 | 77.2727 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 84.9187 | 82.8004 | 87.1483 | 74.4451 | 3211 | 667 | 3221 | 475 | 17 | 3.5790 | |