PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70301-70350 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | * | 97.7704 | 97.8860 | 97.6551 | 86.2578 | 1065 | 23 | 1291 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | * | 97.8366 | 97.9003 | 97.7730 | 86.6718 | 1119 | 24 | 1361 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 70.3015 | 64.9123 | 76.6667 | 98.8432 | 37 | 20 | 69 | 21 | 16 | 76.1905 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | * | 81.4941 | 77.6699 | 85.7143 | 87.9676 | 80 | 23 | 102 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | * | 86.6250 | 84.6154 | 88.7324 | 87.5548 | 99 | 18 | 126 | 16 | 16 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 85.4239 | 80.6452 | 90.8046 | 75.2137 | 50 | 12 | 158 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7659 | 98.1114 | 99.4293 | 42.4615 | 4000 | 77 | 4007 | 23 | 16 | 69.5652 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 93.1550 | 88.6524 | 98.1395 | 56.7404 | 6039 | 773 | 844 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.0590 | 87.7946 | 98.9950 | 44.8626 | 1453 | 202 | 2364 | 24 | 16 | 66.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | het | 56.0161 | 39.5489 | 95.9799 | 46.2162 | 263 | 402 | 382 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.2391 | 67.4470 | 96.0280 | 47.6132 | 605 | 292 | 411 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.1679 | 84.2975 | 92.4107 | 60.6327 | 204 | 38 | 207 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1142 | 74.5902 | 88.8889 | 51.3514 | 91 | 31 | 128 | 16 | 16 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.4666 | 99.6442 | 97.3165 | 63.6796 | 6162 | 22 | 6165 | 170 | 16 | 9.4118 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.8070 | 99.7711 | 95.9189 | 66.2738 | 3922 | 9 | 3925 | 167 | 16 | 9.5808 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.9487 | 98.5441 | 99.3567 | 82.1497 | 3858 | 57 | 3861 | 25 | 16 | 64.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0894 | 97.2749 | 98.9176 | 66.3428 | 1642 | 46 | 1645 | 18 | 16 | 88.8889 | |
| gduggal-bwafb | SNP | ti | segdup | * | 99.0195 | 99.5086 | 98.5352 | 91.2837 | 19441 | 96 | 19441 | 289 | 16 | 5.5363 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 73.3411 | 59.7723 | 94.8795 | 89.6250 | 315 | 212 | 315 | 17 | 16 | 94.1176 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 69.5282 | 53.7870 | 98.2949 | 51.2231 | 980 | 842 | 980 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | INDEL | I6_15 | map_siren | het | 82.9333 | 77.6224 | 89.0244 | 72.7121 | 111 | 32 | 146 | 18 | 16 | 88.8889 | |
| eyeh-varpipe | SNP | * | HG002complexvar | hetalt | 99.7172 | 99.6774 | 99.7570 | 25.7273 | 309 | 1 | 6978 | 17 | 16 | 94.1176 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 72.7749 | 91.8182 | 60.2740 | 84.1649 | 101 | 9 | 88 | 58 | 16 | 27.5862 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7381 | 99.9188 | 99.5581 | 52.7387 | 11075 | 9 | 10815 | 48 | 16 | 33.3333 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | homalt | 99.8701 | 99.8556 | 99.8846 | 63.0607 | 26964 | 39 | 25962 | 30 | 16 | 53.3333 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e0 | homalt | 99.8725 | 99.8583 | 99.8868 | 65.3085 | 27484 | 39 | 26466 | 30 | 16 | 53.3333 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e1 | homalt | 99.8719 | 99.8597 | 99.8841 | 65.3160 | 27757 | 39 | 26718 | 31 | 16 | 51.6129 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | * | 99.1809 | 99.6144 | 98.7511 | 77.4196 | 19636 | 76 | 19293 | 244 | 16 | 6.5574 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | * | 99.1763 | 99.6246 | 98.7319 | 78.7456 | 20435 | 77 | 20088 | 258 | 16 | 6.2016 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | * | 99.1748 | 99.6284 | 98.7252 | 78.8203 | 20646 | 77 | 20291 | 262 | 16 | 6.1069 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.5507 | 98.2850 | 85.6800 | 74.8152 | 1490 | 26 | 1430 | 239 | 16 | 6.6946 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.4522 | 98.1108 | 75.6868 | 87.8606 | 779 | 15 | 551 | 177 | 16 | 9.0396 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | het | 95.9704 | 99.7405 | 92.4749 | 70.7958 | 15377 | 40 | 15189 | 1236 | 16 | 1.2945 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e0 | het | 96.0096 | 99.7465 | 92.5426 | 72.2574 | 15737 | 40 | 15549 | 1253 | 16 | 1.2769 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | het | 96.0176 | 99.7490 | 92.5553 | 72.3251 | 15898 | 40 | 15702 | 1263 | 16 | 1.2668 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.2345 | 95.7792 | 96.6942 | 67.4731 | 590 | 26 | 585 | 20 | 16 | 80.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3868 | 99.5904 | 99.1841 | 39.0236 | 1945 | 8 | 1945 | 16 | 16 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | HG002complexvar | homalt | 99.8699 | 99.8736 | 99.8662 | 51.8330 | 13431 | 17 | 13436 | 18 | 16 | 88.8889 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7277 | 98.8115 | 98.6441 | 72.5709 | 1164 | 14 | 1164 | 16 | 16 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.9781 | 94.7333 | 99.3319 | 50.0000 | 2824 | 157 | 2825 | 19 | 16 | 84.2105 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.0173 | 99.3569 | 94.7853 | 69.0702 | 309 | 2 | 309 | 17 | 16 | 94.1176 | |
| hfeng-pmm3 | SNP | * | HG002complexvar | het | 99.8290 | 99.6758 | 99.9825 | 18.2080 | 463988 | 1509 | 463859 | 81 | 16 | 19.7531 | |
| hfeng-pmm3 | SNP | ti | map_l125_m1_e0 | * | 99.5837 | 99.4989 | 99.6687 | 69.3283 | 29188 | 147 | 29184 | 97 | 16 | 16.4948 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | * | 99.5898 | 99.5076 | 99.6722 | 70.9814 | 30109 | 149 | 30105 | 99 | 16 | 16.1616 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e1 | * | 99.5907 | 99.5093 | 99.6723 | 71.0190 | 30419 | 150 | 30415 | 100 | 16 | 16.0000 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | * | 98.6338 | 98.8840 | 98.3849 | 89.8595 | 7797 | 88 | 7797 | 128 | 16 | 12.5000 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | * | 98.6325 | 98.8857 | 98.3807 | 89.9200 | 7898 | 89 | 7898 | 130 | 16 | 12.3077 | |
| hfeng-pmm2 | SNP | ti | map_l100_m1_e0 | het | 99.3403 | 99.3387 | 99.3419 | 67.8029 | 29744 | 198 | 29737 | 197 | 16 | 8.1218 | |
| hfeng-pmm2 | SNP | ti | map_l100_m2_e0 | het | 99.3370 | 99.3436 | 99.3305 | 69.0739 | 30421 | 201 | 30414 | 205 | 16 | 7.8049 | |
| hfeng-pmm2 | SNP | ti | map_l100_m2_e1 | het | 99.3427 | 99.3508 | 99.3346 | 69.0698 | 30759 | 201 | 30752 | 206 | 16 | 7.7670 | |