PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
70001-70050 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 26.8531 | 20.9150 | 37.5000 | 78.8079 | 32 | 121 | 24 | 40 | 15 | 37.5000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 32.5779 | 41.6667 | 26.7442 | 96.8657 | 115 | 161 | 115 | 315 | 15 | 4.7619 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | homalt | 95.9129 | 92.2138 | 99.9212 | 63.8760 | 25380 | 2143 | 25364 | 20 | 15 | 75.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e1 | homalt | 95.9332 | 92.2507 | 99.9220 | 63.8706 | 25642 | 2154 | 25625 | 20 | 15 | 75.0000 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | * | 78.6667 | 77.6316 | 79.7297 | 67.6856 | 59 | 17 | 59 | 15 | 15 | 100.0000 | |
| ghariani-varprowl | INDEL | * | tech_badpromoters | het | 81.3187 | 94.8718 | 71.1538 | 54.3860 | 37 | 2 | 37 | 15 | 15 | 100.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 80.1595 | 67.7444 | 98.1461 | 38.4977 | 901 | 429 | 900 | 17 | 15 | 88.2353 | |
| asubramanian-gatk | INDEL | D1_5 | HG002complexvar | het | 99.2391 | 98.6082 | 99.8781 | 56.4759 | 20476 | 289 | 20484 | 25 | 15 | 60.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.8792 | 96.0199 | 97.7540 | 64.3266 | 579 | 24 | 914 | 21 | 15 | 71.4286 | |
| asubramanian-gatk | SNP | ti | HG002complexvar | homalt | 98.1740 | 96.4210 | 99.9920 | 18.6413 | 186539 | 6924 | 186529 | 15 | 15 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | HG002complexvar | het | 55.6456 | 71.4286 | 45.5752 | 82.8658 | 5 | 2 | 103 | 123 | 15 | 12.1951 | |
| anovak-vg | INDEL | C1_5 | HG002compoundhet | * | 24.7863 | 100.0000 | 14.1463 | 75.0305 | 1 | 0 | 29 | 176 | 15 | 8.5227 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.7340 | 94.7522 | 92.7374 | 52.4568 | 325 | 18 | 332 | 26 | 15 | 57.6923 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | * | 75.8631 | 73.5043 | 78.3784 | 88.8554 | 86 | 31 | 87 | 24 | 15 | 62.5000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | * | 76.3127 | 73.8095 | 78.9916 | 88.9713 | 93 | 33 | 94 | 25 | 15 | 60.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | * | 76.3524 | 73.4375 | 79.5082 | 88.8584 | 94 | 34 | 97 | 25 | 15 | 60.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 22.7920 | 22.7273 | 22.8571 | 61.5385 | 5 | 17 | 8 | 27 | 15 | 55.5556 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.3593 | 92.2917 | 96.5217 | 82.2462 | 443 | 37 | 444 | 16 | 15 | 93.7500 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8489 | 98.6987 | 98.9996 | 76.4157 | 2427 | 32 | 2375 | 24 | 15 | 62.5000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.7733 | 90.0718 | 97.7922 | 67.5516 | 753 | 83 | 753 | 17 | 15 | 88.2353 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7729 | 99.7421 | 99.8038 | 67.8356 | 9667 | 25 | 9667 | 19 | 15 | 78.9474 | |
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | homalt | 99.7275 | 99.5741 | 99.8813 | 63.4132 | 16833 | 72 | 16833 | 20 | 15 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e0 | homalt | 99.7291 | 99.5741 | 99.8845 | 66.0253 | 17301 | 74 | 17301 | 20 | 15 | 75.0000 | |
| bgallagher-sentieon | SNP | * | map_l125_m2_e1 | homalt | 99.7315 | 99.5779 | 99.8856 | 66.0476 | 17458 | 74 | 17458 | 20 | 15 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l150_m0_e0 | het | 98.4386 | 98.9798 | 97.9033 | 83.1082 | 5045 | 52 | 5043 | 108 | 15 | 13.8889 | |
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2725 | 99.8634 | 98.6886 | 65.8031 | 17544 | 24 | 17534 | 233 | 15 | 6.4378 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | het | 98.2208 | 99.1138 | 97.3437 | 79.3814 | 4362 | 39 | 4361 | 119 | 15 | 12.6050 | |
| astatham-gatk | SNP | ti | map_l150_m0_e0 | * | 93.2170 | 87.6733 | 99.5090 | 82.5398 | 6892 | 969 | 6890 | 34 | 15 | 44.1176 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5442 | 98.3435 | 98.7456 | 63.1402 | 10924 | 184 | 11336 | 144 | 15 | 10.4167 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.9774 | 95.2756 | 87.0504 | 53.0405 | 121 | 6 | 121 | 18 | 15 | 83.3333 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e0 | het | 49.5663 | 40.2414 | 64.5161 | 91.8362 | 200 | 297 | 220 | 121 | 15 | 12.3967 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e1 | het | 49.1777 | 39.7638 | 64.4315 | 91.9559 | 202 | 306 | 221 | 122 | 15 | 12.2951 | |
| anovak-vg | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6861 | 95.4198 | 95.9538 | 64.2562 | 500 | 24 | 498 | 21 | 15 | 71.4286 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8087 | 99.7134 | 99.9043 | 58.1701 | 28179 | 81 | 28181 | 27 | 15 | 55.5556 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.9781 | 96.7532 | 97.2039 | 68.0840 | 596 | 20 | 591 | 17 | 15 | 88.2353 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.1429 | 95.1220 | 83.8710 | 75.9067 | 78 | 4 | 78 | 15 | 15 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7390 | 98.7601 | 98.7179 | 73.4197 | 1593 | 20 | 1540 | 20 | 15 | 75.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.8693 | 98.6987 | 99.0405 | 76.6032 | 2427 | 32 | 2374 | 23 | 15 | 65.2174 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8101 | 96.4286 | 97.1947 | 67.9535 | 594 | 22 | 589 | 17 | 15 | 88.2353 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.3235 | 86.4435 | 99.0619 | 31.9285 | 1575 | 247 | 1584 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_siren | * | 99.0944 | 99.1782 | 99.0107 | 80.6593 | 3500 | 29 | 3503 | 35 | 15 | 42.8571 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9624 | 98.4167 | 99.5141 | 71.6519 | 3481 | 56 | 3482 | 17 | 15 | 88.2353 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8100 | 92.2531 | 99.6523 | 26.1175 | 4287 | 360 | 4299 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7653 | 92.1626 | 99.6610 | 30.6426 | 4398 | 374 | 4410 | 15 | 15 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | het | 98.4530 | 98.2748 | 98.6318 | 80.8695 | 1652 | 29 | 1658 | 23 | 15 | 65.2174 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.0809 | 95.6851 | 98.5179 | 60.2481 | 1264 | 57 | 1263 | 19 | 15 | 78.9474 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.1713 | 99.1535 | 99.1891 | 87.0415 | 2694 | 23 | 2691 | 22 | 15 | 68.1818 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 99.4197 | 99.4416 | 99.3979 | 75.9193 | 9082 | 51 | 9080 | 55 | 15 | 27.2727 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.2878 | 94.3032 | 98.3577 | 77.3927 | 1076 | 65 | 1078 | 18 | 15 | 83.3333 | |
| raldana-dualsentieon | SNP | * | HG002compoundhet | * | 97.7792 | 95.7401 | 99.9071 | 39.6169 | 24722 | 1100 | 24722 | 23 | 15 | 65.2174 | |