PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69901-69950 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | * | 99.3900 | 99.2241 | 99.5564 | 68.9143 | 10998 | 86 | 10997 | 49 | 15 | 30.6122 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002complexvar | * | 96.3580 | 94.4005 | 98.3985 | 65.2184 | 1551 | 92 | 1536 | 25 | 15 | 60.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.4965 | 92.9078 | 98.2335 | 72.2151 | 1310 | 100 | 1279 | 23 | 15 | 65.2174 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.1918 | 84.5070 | 80.0000 | 56.3953 | 60 | 11 | 60 | 15 | 15 | 100.0000 | |
| hfeng-pmm2 | SNP | * | HG002complexvar | het | 99.8103 | 99.6430 | 99.9782 | 18.0375 | 463835 | 1662 | 463706 | 101 | 15 | 14.8515 | |
| hfeng-pmm3 | SNP | tv | map_siren | * | 99.7604 | 99.7104 | 99.8104 | 56.7354 | 45797 | 133 | 45789 | 87 | 15 | 17.2414 | |
| jlack-gatk | INDEL | * | segdup | * | 95.2733 | 98.4742 | 92.2739 | 95.5954 | 2517 | 39 | 2520 | 211 | 15 | 7.1090 | |
| jlack-gatk | INDEL | D16_PLUS | * | hetalt | 94.8361 | 90.8432 | 99.1960 | 37.9289 | 1756 | 177 | 1974 | 16 | 15 | 93.7500 | |
| jlack-gatk | INDEL | D16_PLUS | * | homalt | 98.8194 | 98.9362 | 98.7028 | 69.0115 | 1674 | 18 | 1674 | 22 | 15 | 68.1818 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.8587 | 90.8856 | 99.1952 | 37.8556 | 1755 | 176 | 1972 | 16 | 15 | 93.7500 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.4013 | 98.5588 | 98.2442 | 73.3744 | 1231 | 18 | 1231 | 22 | 15 | 68.1818 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.8587 | 90.8856 | 99.1952 | 37.8556 | 1755 | 176 | 1972 | 16 | 15 | 93.7500 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.4013 | 98.5588 | 98.2442 | 73.3744 | 1231 | 18 | 1231 | 22 | 15 | 68.1818 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.0769 | 99.1803 | 87.6812 | 86.5889 | 121 | 1 | 121 | 17 | 15 | 88.2353 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.1791 | 79.5031 | 98.9806 | 34.9542 | 1408 | 363 | 2039 | 21 | 15 | 71.4286 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.3797 | 98.5411 | 94.3110 | 80.2460 | 2972 | 44 | 2984 | 180 | 15 | 8.3333 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.3734 | 98.8433 | 97.9079 | 86.6050 | 940 | 11 | 936 | 20 | 15 | 75.0000 | |
| qzeng-custom | SNP | ti | map_l150_m0_e0 | homalt | 72.5105 | 57.1894 | 99.0446 | 79.2025 | 1579 | 1182 | 1555 | 15 | 15 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7590 | 99.5966 | 99.9219 | 57.4394 | 28146 | 114 | 28148 | 22 | 15 | 68.1818 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.1964 | 99.5935 | 96.8379 | 59.5200 | 490 | 2 | 490 | 16 | 15 | 93.7500 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | * | het | 97.5719 | 96.3280 | 98.8483 | 63.0112 | 3043 | 116 | 3004 | 35 | 15 | 42.8571 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.0537 | 93.9527 | 98.2507 | 73.2824 | 1709 | 110 | 1685 | 30 | 15 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.0537 | 93.9527 | 98.2507 | 73.2824 | 1709 | 110 | 1685 | 30 | 15 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6465 | 93.3333 | 95.9971 | 67.9047 | 1316 | 94 | 1319 | 55 | 15 | 27.2727 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6112 | 97.5894 | 99.6546 | 48.0405 | 7206 | 178 | 7214 | 25 | 15 | 60.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7194 | 99.5347 | 99.9047 | 51.7499 | 25241 | 118 | 25164 | 24 | 15 | 62.5000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.6844 | 90.6909 | 99.0458 | 31.4136 | 1549 | 159 | 1557 | 15 | 15 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8577 | 98.8657 | 98.8497 | 50.4413 | 2702 | 31 | 2664 | 31 | 15 | 48.3871 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 87.9958 | 80.4949 | 97.0383 | 67.7165 | 553 | 134 | 557 | 17 | 15 | 88.2353 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002compoundhet | hetalt | 98.4111 | 97.0028 | 99.8609 | 64.1248 | 10842 | 335 | 10768 | 15 | 15 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | * | het | 98.7987 | 98.2358 | 99.3681 | 45.8366 | 9856 | 177 | 9592 | 61 | 15 | 24.5902 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1027 | 96.8437 | 99.3947 | 53.9673 | 3774 | 123 | 3777 | 23 | 15 | 65.2174 | |
| ltrigg-rtg2 | SNP | * | map_l125_m1_e0 | * | 98.9740 | 98.1071 | 99.8563 | 58.5564 | 44469 | 858 | 44470 | 64 | 15 | 23.4375 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | * | 98.9920 | 98.1594 | 99.8389 | 61.3454 | 45863 | 860 | 45865 | 74 | 15 | 20.2703 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e1 | * | 98.9981 | 98.1759 | 99.8341 | 61.4299 | 46341 | 861 | 46349 | 77 | 15 | 19.4805 | |
| ltrigg-rtg2 | SNP | * | map_siren | het | 99.2163 | 98.7812 | 99.6552 | 46.0328 | 89881 | 1109 | 89887 | 311 | 15 | 4.8232 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 64.0961 | 94.0104 | 48.6239 | 70.6199 | 361 | 23 | 371 | 392 | 15 | 3.8265 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 84.7268 | 75.8065 | 96.0265 | 93.8384 | 376 | 120 | 435 | 18 | 15 | 83.3333 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.2983 | 56.3218 | 77.6786 | 69.6477 | 49 | 38 | 87 | 25 | 15 | 60.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | * | 97.7659 | 97.5320 | 98.0010 | 98.2503 | 2055 | 52 | 2059 | 42 | 15 | 35.7143 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | * | 97.8100 | 97.5410 | 98.0804 | 98.3346 | 2142 | 54 | 2146 | 42 | 15 | 35.7143 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | * | 97.7935 | 97.5281 | 98.0604 | 98.3524 | 2170 | 55 | 2174 | 43 | 15 | 34.8837 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.4626 | 97.6139 | 97.3118 | 72.5745 | 900 | 22 | 905 | 25 | 15 | 60.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | het | 98.4865 | 98.5946 | 98.3786 | 78.7325 | 2245 | 32 | 2245 | 37 | 15 | 40.5405 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002complexvar | het | 92.9757 | 90.9774 | 95.0637 | 67.1720 | 605 | 60 | 597 | 31 | 15 | 48.3871 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | * | 59.8257 | 64.3678 | 55.8824 | 92.4500 | 56 | 31 | 57 | 45 | 15 | 33.3333 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | * | 59.1325 | 64.4444 | 54.6296 | 93.1904 | 58 | 32 | 59 | 49 | 15 | 30.6122 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.8845 | 98.5348 | 97.2426 | 75.8758 | 538 | 8 | 529 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | HG002complexvar | hetalt | 87.9228 | 79.5656 | 98.2415 | 48.4281 | 806 | 207 | 838 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | * | hetalt | 66.4183 | 50.0953 | 98.5199 | 58.7247 | 1051 | 1047 | 1065 | 16 | 15 | 93.7500 | |