PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
69751-69800 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | ti | map_l150_m2_e0 | homalt | 99.4533 | 99.1203 | 99.7886 | 67.8815 | 7549 | 67 | 7554 | 16 | 15 | 93.7500 | |
| ckim-dragen | SNP | ti | map_l150_m2_e1 | homalt | 99.4457 | 99.1031 | 99.7907 | 67.9320 | 7624 | 69 | 7629 | 16 | 15 | 93.7500 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4149 | 99.3902 | 95.5166 | 51.8310 | 489 | 3 | 490 | 23 | 15 | 65.2174 | |
| cchapple-custom | INDEL | * | map_l150_m1_e0 | * | 95.3104 | 96.2631 | 94.3764 | 89.0069 | 1288 | 50 | 1309 | 78 | 15 | 19.2308 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5939 | 97.9738 | 99.2218 | 68.0216 | 3820 | 79 | 3825 | 30 | 15 | 50.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 96.5548 | 94.1128 | 99.1270 | 61.5152 | 2270 | 142 | 2271 | 20 | 15 | 75.0000 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3536 | 99.3753 | 99.3320 | 81.7241 | 6840 | 43 | 6840 | 46 | 15 | 32.6087 | |
| ckim-gatk | SNP | ti | HG002compoundhet | het | 99.4351 | 99.0847 | 99.7881 | 40.5181 | 9418 | 87 | 9418 | 20 | 15 | 75.0000 | |
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3819 | 99.8008 | 98.9665 | 67.1777 | 17533 | 35 | 17523 | 183 | 15 | 8.1967 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | * | 83.9775 | 73.9449 | 97.1598 | 86.1410 | 12317 | 4340 | 12315 | 360 | 15 | 4.1667 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | het | 87.8849 | 81.0480 | 95.9816 | 88.0637 | 8553 | 2000 | 8551 | 358 | 15 | 4.1899 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | het | 84.2881 | 73.9489 | 97.9885 | 86.2255 | 1706 | 601 | 1705 | 35 | 15 | 42.8571 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | het | 84.2890 | 73.9650 | 97.9626 | 86.2811 | 1733 | 610 | 1731 | 36 | 15 | 41.6667 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.5938 | 99.1094 | 88.6598 | 70.4168 | 779 | 7 | 774 | 99 | 15 | 15.1515 | |
| ckim-dragen | INDEL | * | map_siren | homalt | 98.9825 | 98.9454 | 99.0196 | 81.6305 | 2627 | 28 | 2626 | 26 | 15 | 57.6923 | |
| ckim-dragen | INDEL | D16_PLUS | HG002complexvar | hetalt | 92.9712 | 89.4737 | 96.7532 | 47.3804 | 221 | 26 | 447 | 15 | 15 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.6192 | 89.9522 | 97.5980 | 66.0369 | 752 | 84 | 772 | 19 | 15 | 78.9474 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.8248 | 96.2264 | 99.4772 | 49.0761 | 714 | 28 | 3235 | 17 | 15 | 88.2353 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6012 | 95.7537 | 99.5214 | 52.8600 | 902 | 40 | 3535 | 17 | 15 | 88.2353 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.2560 | 99.0686 | 99.4441 | 78.7870 | 6595 | 62 | 6619 | 37 | 15 | 40.5405 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0491 | 98.9618 | 99.1365 | 81.8417 | 4194 | 44 | 4248 | 37 | 15 | 40.5405 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | homalt | 61.1885 | 50.6098 | 77.3585 | 93.7537 | 83 | 81 | 82 | 24 | 15 | 62.5000 | |
| ciseli-custom | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 22.6415 | 96.3872 | 0 | 0 | 12 | 41 | 15 | 36.5854 | |
| ciseli-custom | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 22.7273 | 96.3272 | 0 | 0 | 10 | 34 | 15 | 44.1176 | |
| ciseli-custom | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 23.8095 | 92.5926 | 0 | 0 | 10 | 32 | 15 | 46.8750 | |
| ciseli-custom | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 22.8571 | 92.8279 | 0 | 0 | 8 | 27 | 15 | 55.5556 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 43.8881 | 34.0206 | 61.8182 | 89.1304 | 33 | 64 | 34 | 21 | 15 | 71.4286 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 35.4839 | 31.4286 | 40.7407 | 83.1250 | 11 | 24 | 11 | 16 | 15 | 93.7500 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 20.7836 | 13.0081 | 51.6667 | 91.2281 | 32 | 214 | 31 | 29 | 15 | 51.7241 | |
| ckim-dragen | SNP | tv | map_siren | homalt | 99.7415 | 99.5824 | 99.9011 | 51.8437 | 17168 | 72 | 17170 | 17 | 15 | 88.2353 | |
| ckim-gatk | INDEL | * | map_siren | het | 97.5443 | 99.0018 | 96.1290 | 86.6172 | 4463 | 45 | 4470 | 180 | 15 | 8.3333 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.6165 | 99.2278 | 94.1392 | 60.2041 | 257 | 2 | 257 | 16 | 15 | 93.7500 | |
| ckim-gatk | INDEL | D1_5 | HG002complexvar | het | 99.7759 | 99.7111 | 99.8409 | 56.3066 | 20705 | 60 | 20710 | 33 | 15 | 45.4545 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6249 | 99.5200 | 99.7301 | 51.4696 | 11818 | 57 | 11823 | 32 | 15 | 46.8750 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 68.4973 | 52.5761 | 98.2495 | 47.4411 | 898 | 810 | 898 | 16 | 15 | 93.7500 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 84.4268 | 73.3771 | 99.3944 | 39.7122 | 2792 | 1013 | 2790 | 17 | 15 | 88.2353 | |
| gduggal-bwaplat | SNP | * | map_l150_m0_e0 | * | 57.1530 | 40.1263 | 99.2803 | 94.5754 | 4828 | 7204 | 4828 | 35 | 15 | 42.8571 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 70.4260 | 57.0216 | 92.0694 | 94.2733 | 739 | 557 | 743 | 64 | 15 | 23.4375 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.6934 | 79.9189 | 99.6323 | 81.5479 | 4334 | 1089 | 4335 | 16 | 15 | 93.7500 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.6934 | 79.9189 | 99.6323 | 81.5479 | 4334 | 1089 | 4335 | 16 | 15 | 93.7500 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.8721 | 77.5325 | 98.7699 | 72.5739 | 1370 | 397 | 1365 | 17 | 15 | 88.2353 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 27.0270 | 90.4393 | 0 | 0 | 10 | 27 | 15 | 55.5556 | |
| eyeh-varpipe | INDEL | D16_PLUS | HG002complexvar | hetalt | 28.7793 | 17.0040 | 93.5897 | 61.3861 | 42 | 205 | 219 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | het | 77.8836 | 75.6410 | 80.2632 | 78.7709 | 59 | 19 | 61 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | * | 97.2110 | 97.1031 | 97.3190 | 85.5164 | 838 | 25 | 1089 | 30 | 15 | 50.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | het | 93.1960 | 92.8571 | 93.5374 | 77.7104 | 260 | 20 | 275 | 19 | 15 | 78.9474 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 39.7351 | 28.3019 | 66.6667 | 55.4455 | 15 | 38 | 30 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 86.4865 | 99.7553 | 0 | 0 | 96 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.2000 | 4.0000 | 36.0000 | 51.9231 | 1 | 24 | 9 | 16 | 15 | 93.7500 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 16.6667 | 30.7692 | 0 | 0 | 3 | 15 | 15 | 100.0000 | |