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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1383 1384 1385 1386 1387 1388 1389 1390 1391 ... 1720 1721 » 69301-69350 / 86044 show all
hfeng-pmm2	SNP	*	segdup	*	99.6762	99.8147	99.5380	90.2632	28015	52	28009	130	13	10.0000
hfeng-pmm2	SNP	*	segdup	homalt	99.9116	99.9441	99.8791	88.8962	10737	6	10737	13	13	100.0000
hfeng-pmm2	SNP	ti	map_l150_m0_e0	*	98.9345	99.2367	98.6341	81.2825	7801	60	7799	108	13	12.0370
hfeng-pmm2	SNP	ti	map_l150_m1_e0	het	99.0031	99.1673	98.8394	78.5331	12267	103	12263	144	13	9.0278
hfeng-pmm2	SNP	ti	map_l150_m2_e0	het	99.0233	99.1926	98.8546	79.5912	12777	104	12773	148	13	8.7838
hfeng-pmm2	SNP	ti	map_l150_m2_e1	het	99.0257	99.2009	98.8512	79.6610	12911	104	12907	150	13	8.6667
hfeng-pmm2	SNP	tv	HG002complexvar	homalt	99.9732	99.9664	99.9800	23.0303	95079	32	95074	19	13	68.4211
hfeng-pmm2	SNP	tv	map_l125_m0_e0	*	98.7817	99.0499	98.5149	77.4668	6568	63	6567	99	13	13.1313
hfeng-pmm3	INDEL	*	map_siren	*	99.0674	98.8394	99.2964	80.1151	7324	86	7339	52	13	25.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.8763	98.9362	93.0000	65.6947	186	2	186	14	13	92.8571
hfeng-pmm1	SNP	tv	map_l125_m0_e0	*	99.1084	98.9142	99.3035	75.2093	6559	72	6558	46	13	28.2609
hfeng-pmm2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.1661	96.2430	98.1070	74.8751	2075	81	2073	40	13	32.5000
hfeng-pmm2	INDEL	*	map_l100_m1_e0	*	98.3031	98.4384	98.1682	84.3925	3530	56	3537	66	13	19.6970
hfeng-pmm2	INDEL	*	map_l100_m2_e0	*	98.2981	98.4295	98.1671	85.2737	3635	58	3642	68	13	19.1176
hfeng-pmm2	INDEL	*	map_l100_m2_e1	*	98.3131	98.4292	98.1972	85.3384	3697	59	3704	68	13	19.1176
hfeng-pmm3	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	homalt	82.5175	83.0986	81.9444	57.8947	59	12	59	13	13	100.0000
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5999	99.7890	99.4115	47.4486	2365	5	2365	14	13	92.8571
hfeng-pmm3	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.9969	97.9969	97.9969	65.7700	636	13	636	13	13	100.0000
hfeng-pmm3	SNP	*	map_l125_m1_e0	het	99.4129	99.3132	99.5129	70.9946	28197	195	28191	138	13	9.4203
hfeng-pmm3	SNP	*	map_l125_m1_e0	homalt	99.7929	99.7693	99.8165	66.4802	16866	39	16866	31	13	41.9355
hfeng-pmm3	SNP	*	map_l125_m2_e0	het	99.4247	99.3281	99.5214	72.2786	29121	197	29115	140	13	9.2857
hfeng-pmm3	SNP	*	map_l125_m2_e0	homalt	99.7985	99.7755	99.8215	68.9465	17336	39	17336	31	13	41.9355
hfeng-pmm3	SNP	*	map_l125_m2_e1	het	99.4275	99.3320	99.5233	72.3246	29442	198	29436	141	13	9.2199
hfeng-pmm3	SNP	*	map_l125_m2_e1	homalt	99.8003	99.7775	99.8231	68.9786	17493	39	17493	31	13	41.9355
hfeng-pmm3	SNP	*	map_l150_m1_e0	het	99.2744	99.1820	99.3670	75.4908	19158	158	19152	122	13	10.6557
hfeng-pmm3	SNP	*	map_l150_m2_e0	het	99.2915	99.2103	99.3729	76.6202	19974	159	19968	126	13	10.3175
hfeng-pmm3	SNP	*	map_l150_m2_e1	het	99.2946	99.2143	99.3751	76.6790	20203	160	20197	127	13	10.2362
hfeng-pmm3	SNP	ti	map_l100_m0_e0	*	99.5150	99.4304	99.5997	67.5390	21647	124	21644	87	13	14.9425
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	88.3435	79.5079	99.3884	37.9338	2165	558	2275	14	13	92.8571
jlack-gatk	INDEL	*	map_l125_m2_e0	*	94.7169	98.2240	91.4515	90.7417	2157	39	2161	202	13	6.4356
jlack-gatk	INDEL	D16_PLUS	HG002compoundhet	homalt	55.1724	100.0000	38.0952	66.6667	8	0	8	13	13	100.0000
jlack-gatk	INDEL	D1_5	map_siren	*	96.8891	99.0932	94.7810	83.4660	3497	32	3505	193	13	6.7358
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	89.7059	100.0000	81.3333	90.5779	61	0	61	14	13	92.8571
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	98.5965	99.6454	97.5694	72.5584	562	2	562	14	13	92.8571
jlack-gatk	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.1776	96.3907	97.9775	74.4326	908	34	872	18	13	72.2222
jlack-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	97.7029	96.5935	98.8381	61.3357	1276	45	1276	15	13	86.6667
jlack-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8935	99.8564	99.9306	55.5702	20170	29	20170	14	13	92.8571
jlack-gatk	SNP	*	map_l150_m1_e0	homalt	99.0703	98.3146	99.8379	69.3588	11083	190	11083	18	13	72.2222
jlack-gatk	SNP	*	map_l150_m2_e0	homalt	99.0914	98.3503	99.8438	71.6709	11506	193	11506	18	13	72.2222
jlack-gatk	SNP	*	map_l150_m2_e1	homalt	99.0927	98.3512	99.8455	71.6669	11632	195	11632	18	13	72.2222
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.1812	99.7479	98.6208	60.0301	17806	45	17805	249	13	5.2209
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.1997	98.5761	97.8261	89.4229	900	13	900	20	13	65.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.6982	98.8933	98.5039	87.7567	1251	14	1251	19	13	68.4211
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.6868	99.2734	98.1070	88.8808	1503	11	1503	29	14	48.2759
jlack-gatk	SNP	tv	HG002complexvar	homalt	99.9385	99.8959	99.9811	22.6324	95012	99	94994	18	14	77.7778
jlack-gatk	SNP	tv	HG002compoundhet	het	98.9462	99.4650	98.4329	56.5753	4648	25	4648	74	14	18.9189
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.4586	99.0170	97.9065	84.2545	2619	26	2619	56	14	25.0000
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.4853	99.5058	99.4648	66.6987	4832	24	4832	26	14	53.8462
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	94.2361	89.5703	99.4147	34.3662	2439	284	2548	15	14	93.3333
hfeng-pmm2	SNP	*	map_l125_m1_e0	homalt	99.8078	99.8107	99.8048	66.6048	16873	32	16873	33	14	42.4242

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