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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1382 1383 1384 1385 1386 1387 1388 1389 1390 ... 1720 1721 » 69251-69300 / 86044 show all
ckim-vqsr	SNP	ti	HG002compoundhet	het	99.2006	98.5692	99.8402	40.6564	9369	136	9369	15	13	86.6667
ckim-vqsr	SNP	ti	map_l100_m1_e0	*	77.5493	63.5768	99.3932	81.5266	30473	17458	30468	186	13	6.9893
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.5115	99.3179	97.7181	73.3548	728	5	728	17	13	76.4706
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.8234	88.7991	99.4503	37.7718	2418	305	2533	14	13	92.8571
dgrover-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3643	11292	4	11292	14	13	92.8571
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.6834	94.2486	99.2472	33.8314	1524	93	1714	13	13	100.0000
dgrover-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.6211	94.1176	99.2614	36.3011	1552	97	1747	13	13	100.0000
ckim-isaac	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	83.6839	72.6708	98.6312	33.2487	1287	484	1297	18	13	72.2222
ckim-isaac	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	96.6757	94.4354	99.0249	47.4574	4056	239	4062	40	13	32.5000
ckim-isaac	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	96.7656	94.6334	98.9961	51.3619	16893	958	17059	173	13	7.5145
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	94.0520	90.0033	98.4822	69.9861	8220	913	8305	128	13	10.1562
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	94.0520	90.0033	98.4822	69.9861	8220	913	8305	128	13	10.1562
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8475	99.4543	98.2480	73.3285	729	4	729	13	13	100.0000
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.9687	87.2567	99.4808	35.1295	2376	347	2491	13	13	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9026	99.9292	99.8761	56.3916	11288	8	11288	14	13	92.8571
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	99.3613	99.1592	99.5643	51.5120	3656	31	3656	16	13	81.2500
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.7710	98.6981	98.8439	73.8011	1592	21	1539	18	13	72.2222
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.6111	99.4746	97.7625	67.1751	568	3	568	13	13	100.0000
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.9105	98.7393	99.0822	76.8986	2428	31	2375	22	13	59.0909
dgrover-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.8084	91.7464	98.0818	67.8189	767	69	767	15	13	86.6667
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3736	99.2639	99.4836	88.1512	2697	20	2697	14	13	92.8571
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.3490	99.4898	99.2086	89.1572	1755	9	1755	14	13	92.8571
dgrover-gatk	SNP	*	map_l125_m1_e0	homalt	99.6085	99.3256	99.8929	63.9547	16791	114	16791	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m2_e0	homalt	99.6075	99.3209	99.8958	66.5083	17257	118	17257	18	13	72.2222
dgrover-gatk	SNP	*	map_l125_m2_e1	homalt	99.6110	99.3269	99.8967	66.5258	17414	118	17414	18	13	72.2222
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	homalt	95.3656	94.1057	96.6597	54.6402	463	29	463	16	13	81.2500
egarrison-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6370	99.4177	99.8572	53.8488	14684	86	14686	21	13	61.9048
egarrison-hhga	INDEL	D1_5	map_l100_m2_e1	*	98.0898	97.9887	98.1912	83.7299	1900	39	1900	35	13	37.1429
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	85.2201	76.0243	96.9466	64.6900	501	158	508	16	13	81.2500
egarrison-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	85.2201	76.0243	96.9466	64.6900	501	158	508	16	13	81.2500
egarrison-hhga	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	87.2649	81.1856	94.3284	73.0491	315	73	316	19	13	68.4211
egarrison-hhga	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	93.7833	93.2862	94.2857	69.6641	264	19	264	16	13	81.2500
egarrison-hhga	SNP	*	map_l125_m1_e0	homalt	99.8075	99.6924	99.9229	66.3441	16853	52	16853	13	13	100.0000
egarrison-hhga	SNP	*	map_l125_m2_e0	homalt	99.8127	99.7007	99.9250	68.9614	17323	52	17323	13	13	100.0000
egarrison-hhga	SNP	*	map_l125_m2_e1	homalt	99.8144	99.7034	99.9257	69.0000	17480	52	17480	13	13	100.0000
egarrison-hhga	SNP	ti	map_l100_m2_e0	homalt	99.8579	99.7870	99.9289	62.7872	18270	39	18270	13	13	100.0000
egarrison-hhga	SNP	ti	map_l100_m2_e1	homalt	99.8593	99.7891	99.9296	62.7744	18455	39	18455	13	13	100.0000
egarrison-hhga	SNP	ti	map_l150_m1_e0	het	99.1299	98.5449	99.7219	75.0856	12190	180	12190	34	13	38.2353
egarrison-hhga	SNP	ti	map_l150_m2_e0	het	99.1606	98.5948	99.7330	76.2545	12700	181	12700	34	13	38.2353
egarrison-hhga	SNP	ti	map_l150_m2_e1	het	99.1616	98.6016	99.7280	76.3347	12833	182	12833	35	13	37.1429
egarrison-hhga	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.2514	97.6938	98.8154	81.5275	2584	61	2586	31	13	41.9355
egarrison-hhga	SNP	tv	map_l100_m1_e0	het	99.3126	98.8649	99.7644	63.7472	15242	175	15242	36	13	36.1111
egarrison-hhga	SNP	tv	map_l100_m2_e0	het	99.3093	98.8845	99.7379	65.3478	15601	176	15601	41	13	31.7073
egarrison-hhga	SNP	tv	map_l100_m2_e1	het	99.3132	98.8894	99.7405	65.3943	15761	177	15761	41	13	31.7073
egarrison-hhga	SNP	tv	segdup	homalt	99.7379	99.8765	99.5996	90.3915	3234	4	3234	13	13	100.0000
eyeh-varpipe	INDEL	*	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt	58.3333	60.0000	56.7568	97.1604	3	2	21	16	13	81.2500
eyeh-varpipe	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged	homalt	52.6316	50.0000	55.5556	97.1787	2	2	20	16	13	81.2500
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.5997	99.7468	99.4531	47.3533	2364	6	2364	13	13	100.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.8395	97.6888	97.9907	65.9474	634	15	634	13	13	100.0000
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	96.1440	99.4681	93.0348	67.3701	187	1	187	14	13	92.8571

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