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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1381 1382 1383 1384 1385 1386 1387 1388 1389 ... 1720 1721 » 69201-69250 / 86044 show all
ciseli-custom	SNP	*	map_l250_m0_e0	het	62.5646	57.7025	68.3215	96.1752	869	637	867	402	13	3.2338
ckim-dragen	INDEL	*	map_l125_m1_e0	*	96.6350	96.8201	96.4505	88.3709	2040	67	2038	75	13	17.3333
ckim-dragen	INDEL	*	map_l125_m2_e0	*	96.6158	96.9035	96.3299	89.2603	2128	68	2126	81	13	16.0494
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5211	99.2995	97.7547	53.9013	567	4	566	13	13	100.0000
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.2823	95.8333	98.7758	84.0415	1242	54	1291	16	13	81.2500
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	96.7867	95.4172	98.1962	86.7315	812	39	871	16	13	81.2500
cchapple-custom	SNP	ti	map_l250_m0_e0	*	95.9625	94.5985	97.3664	93.5930	1296	74	1294	35	13	37.1429
ckim-dragen	INDEL	I1_5	map_siren	*	98.1515	98.0699	98.2333	81.2007	2947	58	2947	53	13	24.5283
ckim-dragen	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	97.4435	95.6053	99.3537	62.1556	2306	106	2306	15	13	86.6667
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.3235	99.1976	99.4496	87.1665	2349	19	2349	13	13	100.0000
ckim-dragen	SNP	ti	HG002compoundhet	homalt	99.8648	99.9053	99.8243	30.4352	7387	7	7388	13	13	100.0000
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.2554	98.9184	99.5947	75.9330	6585	72	6635	27	13	48.1481
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7926	99.8634	99.7220	66.5121	17544	24	17576	49	13	26.5306
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.0870	99.1898	97.0085	80.9382	9059	74	9177	283	13	4.5936
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.0870	99.1898	97.0085	80.9382	9059	74	9177	283	13	4.5936
ckim-dragen	SNP	tv	map_l100_m1_e0	homalt	99.6733	99.5134	99.8336	57.5832	8999	44	8999	15	13	86.6667
ckim-dragen	SNP	tv	map_l100_m2_e0	homalt	99.6739	99.5116	99.8367	60.2338	9169	45	9169	15	13	86.6667
ckim-dragen	SNP	tv	map_l100_m2_e1	homalt	99.6770	99.5162	99.8382	60.2316	9257	45	9257	15	13	86.6667
ckim-dragen	SNP	tv	map_l125_m1_e0	homalt	99.5812	99.4198	99.7432	62.3307	5826	34	5826	15	13	86.6667
ckim-dragen	SNP	tv	map_l125_m2_e0	homalt	99.5838	99.4183	99.7499	65.0891	5982	35	5982	15	13	86.6667
ckim-dragen	SNP	tv	map_l125_m2_e1	homalt	99.5877	99.4238	99.7522	65.1046	6039	35	6039	15	13	86.6667
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.8475	99.4543	98.2480	73.3285	729	4	729	13	13	100.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	92.9687	87.2567	99.4808	35.1295	2376	347	2491	13	13	100.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3829	11292	4	11292	14	13	92.8571
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5196	93.9394	99.2455	33.2429	1519	98	1710	13	13	100.0000
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4603	93.8144	99.2597	35.4174	1547	102	1743	13	13	100.0000
ckim-gatk	INDEL	I1_5	HG002complexvar	het	99.7716	99.6866	99.8566	58.0913	18132	57	18110	26	13	50.0000
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4251	99.4428	99.4073	78.7466	6068	34	6038	36	13	36.1111
ckim-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5230	99.2995	97.7586	67.1946	567	4	567	13	13	100.0000
ckim-gatk	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.6130	91.3876	98.0745	66.7520	764	72	764	15	13	86.6667
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.2068	99.2630	99.1506	88.9811	1751	13	1751	15	13	86.6667
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7780	99.7214	99.8347	68.2340	9665	27	9665	16	13	81.2500
ckim-gatk	SNP	tv	HG002compoundhet	het	99.2595	98.9728	99.5478	55.8932	4625	48	4623	21	13	61.9048
ckim-isaac	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt	80.5197	68.3077	98.0488	51.2195	666	309	804	16	13	81.2500
ckim-isaac	INDEL	I16_PLUS	HG002complexvar	homalt	50.1099	36.8932	78.0822	66.5138	114	195	114	32	13	40.6250
ckim-isaac	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	68.9655	73.1707	65.2174	70.5128	30	11	30	16	13	81.2500
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	76.1905	62.8659	96.6825	50.9872	408	241	408	14	13	92.8571
ckim-isaac	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	89.2397	84.0426	95.1220	53.9757	474	90	468	24	13	54.1667
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.5196	93.9394	99.2455	33.2429	1519	98	1710	13	13	100.0000
ckim-vqsr	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.4603	93.8144	99.2597	35.4174	1547	102	1743	13	13	100.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	het	99.6583	99.4392	99.8784	58.1585	18087	102	18064	22	13	59.0909
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	90.1734	95.1220	85.7143	76.3021	78	4	78	13	13	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.6451	98.4501	98.8410	73.7492	1588	25	1535	18	13	72.2222
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.5230	99.2995	97.7586	67.1946	567	4	567	13	13	100.0000
ckim-vqsr	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8279	98.4953	99.1628	76.9045	2422	37	2369	20	13	65.0000
ckim-vqsr	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.6130	91.3876	98.0745	66.7520	764	72	764	15	13	86.6667
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	99.1782	99.2063	99.1501	88.9866	1750	14	1750	15	13	86.6667
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7314	99.6182	99.8449	68.2587	9655	37	9655	15	13	86.6667
ckim-vqsr	SNP	*	map_l100_m2_e0	het	85.3365	74.9930	98.9898	84.8848	34796	11603	34788	355	13	3.6620
ckim-vqsr	SNP	*	map_l100_m2_e1	het	85.4225	75.1205	98.9994	84.8723	35230	11668	35222	356	13	3.6517

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