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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1380 1381 1382 1383 1384 1385 1386 1387 1388 ... 1720 1721 » 69151-69200 / 86044 show all
astatham-gatk	SNP	ti	map_l125_m0_e0	het	89.1339	80.7092	99.5223	81.9410	6669	1594	6667	32	13	40.6250
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.8999	98.0990	99.7140	75.1504	14294	277	14294	41	13	31.7073
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.8999	98.0990	99.7140	75.1504	14294	277	14294	41	13	31.7073
astatham-gatk	SNP	tv	map_l150_m1_e0	*	91.6254	84.8240	99.6125	79.0350	9256	1656	9254	36	13	36.1111
astatham-gatk	SNP	tv	map_l150_m2_e0	*	91.6536	84.8613	99.6277	80.3003	9636	1719	9634	36	13	36.1111
astatham-gatk	SNP	tv	map_l150_m2_e1	*	91.6416	84.8374	99.6324	80.3148	9758	1744	9756	36	13	36.1111
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.5041	98.4993	96.5287	73.6731	722	11	723	26	13	50.0000
asubramanian-gatk	INDEL	*	map_l100_m1_e0	het	89.5146	84.5190	95.1378	89.5888	1889	346	1898	97	13	13.4021
asubramanian-gatk	INDEL	*	map_l100_m2_e0	het	89.6413	84.6987	95.1965	90.0770	1954	353	1962	99	13	13.1313
asubramanian-gatk	INDEL	*	map_l100_m2_e1	het	89.6239	84.6778	95.1836	90.0945	1984	359	1996	101	13	12.8713
anovak-vg	INDEL	I6_15	segdup	het	38.0775	28.9157	55.7377	91.0688	24	59	34	27	13	48.1481
anovak-vg	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	97.9824	97.9405	98.0243	36.9430	1284	27	1290	26	13	50.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.7788	99.3179	98.2456	73.2684	728	5	728	13	13	100.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	93.6552	88.4686	99.4878	37.7483	2409	314	2525	13	13	100.0000
asubramanian-gatk	INDEL	D1_5	HG002complexvar	homalt	99.7403	99.6226	99.8582	60.0860	10558	40	10565	15	13	86.6667
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5409	99.1719	99.9126	55.4663	25149	210	25156	22	13	59.0909
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	94.7213	91.5952	98.0684	63.9529	534	49	660	13	13	100.0000
asubramanian-gatk	INDEL	I1_5	HG002complexvar	het	99.1051	98.3342	99.8882	58.4164	17886	303	17868	20	13	65.0000
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	98.7291	97.9738	99.4961	65.8453	3820	79	4344	22	13	59.0909
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	93.7915	98.1506	89.8032	88.0725	1486	28	1506	171	13	7.6023
asubramanian-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.2429	98.9091	99.5790	55.5792	27654	305	27674	117	13	11.1111
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.9134	97.0765	98.7647	80.5287	8866	267	8875	111	13	11.7117
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.9134	97.0765	98.7647	80.5287	8866	267	8875	111	13	11.7117
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5214	99.5507	99.4922	74.9449	5096	23	5094	26	13	50.0000
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9204	99.9646	99.8762	56.3374	11292	4	11292	14	13	92.8571
bgallagher-sentieon	INDEL	*	map_siren	homalt	99.3618	99.5480	99.1763	81.3504	2643	12	2649	22	13	59.0909
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	96.1232	93.1973	99.2389	33.3853	1507	110	1695	13	13	100.0000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.1036	93.1474	99.2537	35.9088	1536	113	1729	13	13	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	97.9954	97.2403	98.7624	61.1289	1198	34	1197	15	13	86.6667
bgallagher-sentieon	INDEL	I16_PLUS	HG002complexvar	homalt	97.9398	100.0000	95.9627	70.5667	309	0	309	13	13	100.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3464	99.9061	98.7929	68.3700	1064	1	1064	13	13	100.0000
bgallagher-sentieon	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	96.9904	94.8590	99.2198	62.4389	2288	124	2289	18	13	72.2222
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	99.3553	99.2639	99.4469	87.8858	2697	20	2697	15	13	86.6667
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.5462	99.5186	99.5739	79.3195	10749	52	10749	46	13	28.2609
bgallagher-sentieon	SNP	tv	map_l250_m2_e0	*	98.1510	98.5427	97.7625	89.3375	2840	42	2840	65	13	20.0000
bgallagher-sentieon	SNP	tv	map_l250_m2_e1	*	98.1725	98.5597	97.7884	89.4056	2874	42	2874	65	13	20.0000
cchapple-custom	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.4416	99.2346	99.6494	43.8167	3630	28	5401	19	13	68.4211
cchapple-custom	INDEL	*	map_siren	homalt	98.6746	98.1544	99.2003	78.4454	2606	49	2605	21	13	61.9048
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	het	99.4403	99.1066	99.7762	43.0060	6656	60	8025	18	13	72.2222
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.0216	93.3602	96.7433	74.7215	464	33	505	17	13	76.4706
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	96.2565	95.0509	97.4930	80.7300	653	34	700	18	13	72.2222
ciseli-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_triTR_51to200	*	50.4202	43.4783	60.0000	40.6780	20	26	21	14	13	92.8571
ciseli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_51to200	homalt	45.0000	69.2308	33.3333	58.4615	9	4	9	18	13	72.2222
ciseli-custom	INDEL	D6_15	map_l100_m1_e0	het	63.4344	65.0794	61.8705	90.0572	82	44	86	53	13	24.5283
ciseli-custom	INDEL	D6_15	map_l100_m2_e0	het	63.7616	64.8855	62.6761	90.4313	85	46	89	53	13	24.5283
ciseli-custom	INDEL	D6_15	map_l100_m2_e1	het	63.0961	63.7037	62.5000	90.4573	86	49	90	54	13	24.0741
ciseli-custom	INDEL	D6_15	map_l150_m1_e0	*	55.9441	54.7945	57.1429	94.0171	40	33	40	30	13	43.3333
ciseli-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	11.3208	6.7669	34.6154	89.9614	9	124	9	17	13	76.4706
ciseli-custom	INDEL	I1_5	func_cds	het	78.5185	89.8305	69.7368	38.2114	53	6	53	23	13	56.5217
ciseli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	80.5000	97.2526	68.6708	63.3133	3823	108	3849	1756	13	0.7403

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