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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1377 1378 1379 1380 1381 1382 1383 1384 1385 ... 1720 1721 » 69001-69050 / 86044 show all
gduggal-snapfb	INDEL	*	map_l100_m0_e0	het	92.0855	91.5769	92.5998	82.0643	935	86	951	76	13	17.1053
gduggal-snapfb	INDEL	*	map_l100_m2_e1	homalt	96.5853	94.9258	98.3037	87.2974	1216	65	1217	21	13	61.9048
jli-custom	INDEL	D16_PLUS	*	hetalt	97.3443	95.3958	99.3741	36.1316	1844	89	2064	13	13	100.0000
jli-custom	INDEL	D16_PLUS	*	homalt	99.0858	99.2908	98.8817	67.1754	1680	12	1680	19	13	68.4211
jli-custom	INDEL	D16_PLUS	HG002complexvar	hetalt	94.0295	91.0931	97.1616	45.1497	225	22	445	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.3685	95.4428	99.3735	36.0555	1843	88	2062	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.7625	99.0392	98.4873	71.5773	1237	12	1237	19	13	68.4211
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	97.2360	95.2999	99.2524	31.1832	1541	76	1726	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	97.1957	95.2092	99.2668	33.4959	1570	79	1760	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.3685	95.4428	99.3735	36.0555	1843	88	2062	13	13	100.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.7625	99.0392	98.4873	71.5773	1237	12	1237	19	13	68.4211
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	97.0712	95.8175	98.3581	49.4267	1260	55	1258	21	13	61.9048
jmaeng-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6163	97.7687	99.4788	68.1894	3812	87	3817	20	13	65.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	*	96.4668	93.9469	99.1255	62.0415	2266	146	2267	20	13	65.0000
jmaeng-gatk	SNP	tv	HG002complexvar	homalt	99.2171	98.4618	99.9840	23.0284	93648	1463	93634	15	13	86.6667
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5829	99.6423	99.5235	65.6204	27579	99	27569	132	13	9.8485
jmaeng-gatk	SNP	tv	map_l125_m1_e0	*	83.4629	73.2830	96.9274	85.3732	11737	4279	11735	372	13	3.4946
jmaeng-gatk	SNP	tv	map_l125_m2_e0	*	83.8941	73.9220	96.9762	86.2792	12189	4300	12187	380	13	3.4211
jmaeng-gatk	SNP	tv	map_l125_m2_e1	het	87.8827	81.2376	95.7119	88.2796	8573	1980	8571	384	13	3.3854
jpowers-varprowl	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	17.0622	9.6110	75.9259	78.6561	42	395	41	13	13	100.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4405	99.5463	99.3348	79.5031	10752	49	10752	72	13	18.0556
jli-custom	SNP	*	map_l125_m1_e0	homalt	99.7452	99.5741	99.9169	62.6179	16833	72	16833	14	13	92.8571
jli-custom	SNP	*	map_l125_m2_e0	homalt	99.7463	99.5741	99.9191	65.3928	17301	74	17301	14	13	92.8571
jli-custom	SNP	*	map_l125_m2_e1	homalt	99.7486	99.5779	99.9199	65.4177	17458	74	17458	14	13	92.8571
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3929	99.1600	99.6269	75.2923	5076	43	5074	19	13	68.4211
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	95.8238	92.6407	99.2335	33.1757	1498	119	1683	13	13	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.7772	92.5409	99.2481	35.3886	1526	123	1716	13	13	100.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	94.3820	99.2126	90.0000	53.0201	126	1	126	14	13	92.8571
jpowers-varprowl	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	53.4400	37.6975	91.7582	47.5504	167	276	167	15	13	86.6667
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	87.2063	83.5000	91.2568	61.1465	167	33	167	16	13	81.2500
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	89.0200	83.2370	95.6667	70.2085	288	58	287	13	13	100.0000
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	90.1734	87.6404	92.8571	52.1822	234	33	234	18	13	72.2222
jpowers-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.6230	99.8728	97.4042	72.7150	785	1	788	21	13	61.9048
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.3938	98.9601	99.8314	43.2370	8279	87	8291	14	13	92.8571
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	95.4707	92.3849	98.7698	48.9915	1104	91	1124	14	13	92.8571
ltrigg-rtg1	INDEL	D1_5	HG002compoundhet	homalt	94.9357	94.5017	95.3737	63.6951	275	16	268	13	13	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	93.2272	90.2128	96.4502	72.2490	1272	138	1277	47	13	27.6596
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	96.9159	94.4855	99.4747	56.3830	7933	463	7953	42	13	30.9524
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	*	82.9686	72.3099	97.3129	50.8954	504	193	507	14	13	92.8571
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1571	98.6358	99.6839	46.3252	11713	162	11670	37	13	35.1351
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	*	87.3660	78.4928	98.5011	39.0737	927	254	920	14	13	92.8571
ltrigg-rtg1	INDEL	I1_5	HG002compoundhet	hetalt	96.8755	94.0503	99.8757	63.2515	10512	665	10446	13	13	100.0000
ltrigg-rtg1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	97.9782	96.4324	99.5745	60.1289	8109	300	8190	35	13	37.1429
ltrigg-rtg1	SNP	*	map_l150_m1_e0	homalt	99.7513	99.6186	99.8844	70.3814	11230	43	11232	13	13	100.0000
ltrigg-rtg1	SNP	*	map_l150_m2_e0	homalt	99.7604	99.6324	99.8886	72.6706	11656	43	11658	13	13	100.0000
ltrigg-rtg1	SNP	*	map_l150_m2_e1	homalt	99.7587	99.6280	99.8898	72.7027	11783	44	11789	13	13	100.0000
ltrigg-rtg1	SNP	ti	map_l100_m0_e0	homalt	99.7102	99.5884	99.8324	61.6545	7742	32	7742	13	13	100.0000
ltrigg-rtg1	SNP	tv	map_siren	*	99.4402	99.2053	99.6762	52.0914	45565	365	45564	148	13	8.7838
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	95.6383	94.3878	96.9223	68.8174	2035	121	2047	65	13	20.0000
ltrigg-rtg2	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.4548	98.0660	98.8468	71.0240	5020	99	5057	59	13	22.0339

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