PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68401-68450 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.9089 | 82.5503 | 89.5522 | 75.5027 | 123 | 26 | 120 | 14 | 12 | 85.7143 | |
| rpoplin-dv42 | SNP | * | map_l250_m2_e0 | homalt | 98.7237 | 97.9151 | 99.5458 | 87.7612 | 2630 | 56 | 2630 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | map_l150_m0_e0 | homalt | 98.9435 | 98.3702 | 99.5236 | 74.2304 | 2716 | 45 | 2716 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.1070 | 95.3734 | 98.9048 | 56.9460 | 1175 | 57 | 1174 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | homalt | 99.4894 | 100.0000 | 98.9839 | 62.5911 | 1169 | 0 | 1169 | 12 | 12 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.7226 | 94.2424 | 95.2077 | 70.8837 | 311 | 19 | 298 | 15 | 12 | 80.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | * | 97.8362 | 96.7150 | 98.9836 | 65.6644 | 1266 | 43 | 1266 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.4946 | 94.4444 | 98.6357 | 82.7265 | 1445 | 85 | 1446 | 20 | 12 | 60.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 96.4946 | 94.4444 | 98.6357 | 82.7265 | 1445 | 85 | 1446 | 20 | 12 | 60.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.4731 | 87.4402 | 98.1208 | 65.4453 | 731 | 105 | 731 | 14 | 12 | 85.7143 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | homalt | 99.4262 | 99.0614 | 99.7937 | 67.2577 | 5805 | 55 | 5805 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | homalt | 99.4329 | 99.0693 | 99.7991 | 69.7738 | 5961 | 56 | 5961 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | homalt | 99.4382 | 99.0780 | 99.8010 | 69.8334 | 6018 | 56 | 6018 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | het | 97.0280 | 97.0280 | 97.0280 | 91.3647 | 555 | 17 | 555 | 17 | 12 | 70.5882 | |
| rpoplin-dv42 | SNP | tv | segdup | * | 99.6835 | 99.6835 | 99.6834 | 91.0590 | 8505 | 27 | 8501 | 27 | 12 | 44.4444 | |
| rpoplin-dv42 | SNP | tv | segdup | homalt | 99.7378 | 99.8456 | 99.6302 | 90.4939 | 3233 | 5 | 3233 | 12 | 12 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m0_e0 | * | 99.0621 | 99.0682 | 99.0561 | 67.1734 | 32535 | 306 | 32531 | 310 | 12 | 3.8710 | |
| raldana-dualsentieon | SNP | * | map_l150_m2_e0 | * | 98.9691 | 99.0236 | 98.9147 | 75.5843 | 31541 | 311 | 31535 | 346 | 12 | 3.4682 | |
| raldana-dualsentieon | SNP | * | map_l150_m2_e1 | * | 98.9667 | 99.0283 | 98.9052 | 75.6537 | 31897 | 313 | 31891 | 353 | 12 | 3.3994 | |
| raldana-dualsentieon | SNP | ti | map_l100_m1_e0 | homalt | 99.8161 | 99.7049 | 99.9275 | 56.2318 | 17907 | 53 | 17907 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e0 | homalt | 99.8196 | 99.7105 | 99.9288 | 58.8267 | 18256 | 53 | 18256 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | SNP | ti | map_l100_m2_e1 | homalt | 99.8214 | 99.7134 | 99.9296 | 58.8080 | 18441 | 53 | 18441 | 13 | 12 | 92.3077 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8805 | 99.8672 | 99.8937 | 56.0776 | 11281 | 15 | 11280 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m0_e0 | * | 97.4296 | 96.9290 | 97.9355 | 98.6839 | 1515 | 48 | 1518 | 32 | 12 | 37.5000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | * | 97.8375 | 97.3593 | 98.3205 | 99.0326 | 1401 | 38 | 1405 | 24 | 12 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.3948 | 71.7742 | 81.6514 | 99.9459 | 89 | 35 | 89 | 20 | 12 | 60.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.3619 | 94.7826 | 91.9831 | 63.8720 | 218 | 12 | 218 | 19 | 12 | 63.1579 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5687 | 99.2552 | 99.8842 | 53.3003 | 14660 | 110 | 14664 | 17 | 12 | 70.5882 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | * | 90.1374 | 89.0909 | 91.2088 | 85.8549 | 245 | 30 | 249 | 24 | 12 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4714 | 99.5136 | 99.4293 | 48.5634 | 27823 | 136 | 27875 | 160 | 12 | 7.5000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3248 | 99.5674 | 99.0833 | 60.5130 | 17492 | 76 | 17510 | 162 | 12 | 7.4074 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.2347 | 98.2481 | 96.2420 | 74.4091 | 8973 | 160 | 9117 | 356 | 12 | 3.3708 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.2347 | 98.2481 | 96.2420 | 74.4091 | 8973 | 160 | 9117 | 356 | 12 | 3.3708 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | het | 62.0720 | 46.3158 | 94.0758 | 82.6051 | 396 | 459 | 397 | 25 | 12 | 48.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | het | 63.1452 | 47.4614 | 94.3107 | 84.9473 | 430 | 476 | 431 | 26 | 12 | 46.1538 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e1 | het | 63.3120 | 47.6190 | 94.4325 | 85.0560 | 440 | 484 | 441 | 26 | 12 | 46.1538 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.4384 | 95.9432 | 96.9388 | 58.1197 | 473 | 20 | 475 | 15 | 12 | 80.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.8552 | 97.7169 | 97.9938 | 73.0000 | 642 | 15 | 635 | 13 | 12 | 92.3077 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.4581 | 67.4235 | 99.7403 | 24.8984 | 4603 | 2224 | 4609 | 12 | 12 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | * | 75.9931 | 69.8413 | 83.3333 | 84.8527 | 88 | 38 | 90 | 18 | 12 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | * | 75.8724 | 69.5312 | 83.4862 | 85.1499 | 89 | 39 | 91 | 18 | 12 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | het | 71.4516 | 57.0142 | 95.6803 | 75.8729 | 443 | 334 | 443 | 20 | 12 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e0 | het | 71.6654 | 57.2509 | 95.7806 | 78.7349 | 454 | 339 | 454 | 20 | 12 | 60.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m2_e1 | het | 71.9569 | 57.6543 | 95.6967 | 78.7456 | 467 | 343 | 467 | 21 | 12 | 57.1429 | |
| mlin-fermikit | INDEL | I1_5 | segdup | het | 95.8561 | 94.7955 | 96.9407 | 92.6504 | 510 | 28 | 507 | 16 | 12 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.5634 | 83.9506 | 85.1852 | 72.6351 | 68 | 13 | 69 | 12 | 12 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.4699 | 66.6667 | 68.2927 | 90.5747 | 28 | 14 | 28 | 13 | 12 | 92.3077 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.4545 | 100.0000 | 29.4118 | 88.2759 | 6 | 0 | 5 | 12 | 12 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.1073 | 88.5417 | 91.7293 | 71.7322 | 255 | 33 | 244 | 22 | 12 | 54.5455 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.6589 | 89.8785 | 91.4530 | 77.6930 | 222 | 25 | 214 | 20 | 12 | 60.0000 | |