PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68151-68200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | ti | map_l150_m0_e0 | * | 98.6696 | 97.6466 | 99.7142 | 77.5024 | 7676 | 185 | 7676 | 22 | 11 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.8073 | 97.0976 | 98.5274 | 67.7670 | 1472 | 44 | 1472 | 22 | 11 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.6805 | 98.0570 | 99.3119 | 64.2623 | 3028 | 60 | 3031 | 21 | 11 | 52.3810 | |
| ndellapenna-hhga | SNP | tv | map_l125_m0_e0 | het | 98.2879 | 97.1825 | 99.4189 | 73.8528 | 4277 | 124 | 4277 | 25 | 11 | 44.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | * | 98.3535 | 97.3167 | 99.4126 | 77.2836 | 4062 | 112 | 4062 | 24 | 11 | 45.8333 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.2409 | 98.9242 | 97.5670 | 75.1766 | 2115 | 23 | 2366 | 59 | 11 | 18.6441 | |
| qzeng-custom | INDEL | * | map_l125_m2_e0 | homalt | 83.6240 | 73.9187 | 96.2629 | 86.5020 | 564 | 199 | 747 | 29 | 11 | 37.9310 | |
| qzeng-custom | INDEL | * | map_l125_m2_e1 | homalt | 83.8858 | 74.2894 | 96.3291 | 86.5211 | 575 | 199 | 761 | 29 | 11 | 37.9310 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.3250 | 99.5294 | 99.1213 | 51.0494 | 17767 | 84 | 17824 | 158 | 11 | 6.9620 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | homalt | 99.8049 | 99.6715 | 99.9386 | 57.1476 | 17901 | 59 | 17900 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_siren | het | 99.2569 | 98.8202 | 99.6976 | 45.2238 | 61645 | 736 | 61646 | 187 | 11 | 5.8824 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 57.8606 | 40.8740 | 99.0058 | 44.7850 | 1113 | 1610 | 1195 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 89.9023 | 87.8981 | 92.0000 | 66.5924 | 138 | 19 | 138 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 44.1176 | 75.0000 | 31.2500 | 71.9298 | 6 | 2 | 5 | 11 | 11 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 86.6360 | 76.8019 | 99.3583 | 29.3091 | 1950 | 589 | 2013 | 13 | 11 | 84.6154 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 88.4263 | 79.6804 | 99.3289 | 28.2061 | 1745 | 445 | 1924 | 13 | 11 | 84.6154 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 86.4817 | 76.5507 | 99.3735 | 30.6252 | 2024 | 620 | 2062 | 13 | 11 | 84.6154 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 88.7085 | 94.0415 | 83.9479 | 92.5405 | 363 | 23 | 387 | 74 | 11 | 14.8649 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6500 | 99.6294 | 99.6706 | 40.2309 | 6720 | 25 | 6656 | 22 | 11 | 50.0000 | |
| qzeng-custom | SNP | * | segdup | het | 98.3153 | 98.7007 | 97.9329 | 93.6755 | 17092 | 225 | 16961 | 358 | 11 | 3.0726 | |
| qzeng-custom | SNP | ti | map_l250_m2_e0 | homalt | 73.9407 | 59.0623 | 98.8395 | 89.1089 | 1033 | 716 | 1022 | 12 | 11 | 91.6667 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9381 | 99.9734 | 99.9027 | 56.1708 | 11293 | 3 | 11293 | 11 | 11 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_siren | homalt | 99.3604 | 99.3597 | 99.3611 | 79.7735 | 2638 | 17 | 2644 | 17 | 11 | 64.7059 | |
| raldana-dualsentieon | INDEL | * | segdup | * | 99.0001 | 98.7480 | 99.2534 | 93.8102 | 2524 | 32 | 2526 | 19 | 11 | 57.8947 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002compoundhet | hetalt | 95.9722 | 92.7905 | 99.3799 | 22.0220 | 1789 | 139 | 1763 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.9967 | 89.0226 | 97.3422 | 75.0725 | 592 | 73 | 586 | 16 | 11 | 68.7500 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8797 | 87.6923 | 98.7194 | 39.9301 | 855 | 120 | 848 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.2310 | 86.9440 | 98.2026 | 35.7143 | 606 | 91 | 601 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.8398 | 91.3242 | 98.6369 | 70.6759 | 800 | 76 | 796 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9813 | 98.1884 | 99.7871 | 45.7254 | 6558 | 121 | 6563 | 14 | 11 | 78.5714 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | * | hetalt | 90.2131 | 82.6025 | 99.3685 | 50.0717 | 1733 | 365 | 1731 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 84.7522 | 77.5610 | 93.4132 | 77.6139 | 159 | 46 | 156 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 84.7522 | 77.5610 | 93.4132 | 77.6139 | 159 | 46 | 156 | 11 | 11 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7242 | 99.5972 | 99.8516 | 52.5270 | 10137 | 41 | 10092 | 15 | 11 | 73.3333 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 83.9237 | 76.2376 | 93.3333 | 96.6468 | 154 | 48 | 168 | 12 | 11 | 91.6667 | |
| qzeng-custom | INDEL | D1_5 | map_siren | homalt | 94.1879 | 89.8116 | 99.0126 | 74.9663 | 1049 | 119 | 1103 | 11 | 11 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.4295 | 98.6456 | 94.3107 | 36.3510 | 437 | 6 | 431 | 26 | 11 | 42.3077 | |
| qzeng-custom | INDEL | I16_PLUS | HG002complexvar | het | 88.3834 | 86.1654 | 90.7186 | 58.7909 | 573 | 92 | 606 | 62 | 11 | 17.7419 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.3473 | 94.4444 | 96.2675 | 68.4185 | 595 | 35 | 619 | 24 | 11 | 45.8333 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 79.4806 | 67.1084 | 97.4457 | 90.6775 | 557 | 273 | 763 | 20 | 11 | 55.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 79.5482 | 67.3279 | 97.1883 | 91.0248 | 577 | 280 | 795 | 23 | 11 | 47.8261 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 79.7441 | 67.5862 | 97.2356 | 91.0364 | 588 | 282 | 809 | 23 | 11 | 47.8261 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.6253 | 69.8745 | 98.1273 | 41.9144 | 835 | 360 | 786 | 15 | 11 | 73.3333 | |
| ndellapenna-hhga | INDEL | * | map_l100_m2_e1 | homalt | 98.4736 | 98.2045 | 98.7441 | 83.1392 | 1258 | 23 | 1258 | 16 | 11 | 68.7500 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.8511 | 80.2817 | 81.4286 | 43.5484 | 57 | 14 | 57 | 13 | 11 | 84.6154 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | homalt | 99.1884 | 99.4007 | 98.9770 | 79.1578 | 1161 | 7 | 1161 | 12 | 11 | 91.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 87.5803 | 85.6459 | 89.6040 | 74.6550 | 179 | 30 | 181 | 21 | 11 | 52.3810 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.9356 | 91.3534 | 94.5736 | 81.3987 | 243 | 23 | 244 | 14 | 11 | 78.5714 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | * | 90.3034 | 89.5349 | 91.0853 | 85.3075 | 231 | 27 | 235 | 23 | 11 | 47.8261 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | * | 90.3148 | 89.3939 | 91.2548 | 85.9433 | 236 | 28 | 240 | 23 | 11 | 47.8261 | |