PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
68051-68100 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5610 | 97.4523 | 99.6952 | 74.0600 | 6541 | 171 | 6541 | 20 | 11 | 55.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 85.9498 | 90.2468 | 82.0433 | 90.3390 | 768 | 83 | 795 | 174 | 11 | 6.3218 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.8792 | 96.9561 | 94.8260 | 86.0126 | 4109 | 129 | 4142 | 226 | 11 | 4.8673 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 75.7282 | 95.1220 | 62.9032 | 93.1188 | 39 | 2 | 39 | 23 | 11 | 47.8261 | |
| jli-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 59.2593 | 100.0000 | 42.1053 | 67.7966 | 8 | 0 | 8 | 11 | 11 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7500 | 99.1632 | 98.3402 | 56.4720 | 711 | 6 | 711 | 12 | 11 | 91.6667 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.9085 | 96.9156 | 98.9221 | 57.0053 | 1194 | 38 | 1193 | 13 | 11 | 84.6154 | |
| jli-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.2234 | 91.3356 | 99.4570 | 29.5056 | 2161 | 205 | 2198 | 12 | 11 | 91.6667 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.5269 | 91.7910 | 97.4308 | 60.3759 | 492 | 44 | 493 | 13 | 11 | 84.6154 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2162 | 95.0172 | 99.5194 | 52.2792 | 3318 | 174 | 3313 | 16 | 11 | 68.7500 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.1505 | 94.9192 | 99.4892 | 54.6175 | 3699 | 198 | 3701 | 19 | 11 | 57.8947 | |
| ltrigg-rtg1 | SNP | * | * | hetalt | 99.2007 | 99.6556 | 98.7500 | 40.5405 | 868 | 3 | 869 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | * | 97.7139 | 95.7932 | 99.7133 | 83.6180 | 7651 | 336 | 7651 | 22 | 11 | 50.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m0_e0 | * | 98.1783 | 96.6671 | 99.7375 | 70.0220 | 7599 | 262 | 7598 | 20 | 11 | 55.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m1_e0 | homalt | 99.6993 | 99.5496 | 99.8494 | 70.3647 | 7294 | 33 | 7295 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e0 | homalt | 99.7107 | 99.5667 | 99.8552 | 72.6188 | 7583 | 33 | 7584 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m2_e1 | homalt | 99.7136 | 99.5710 | 99.8566 | 72.6687 | 7660 | 33 | 7662 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | * | hetalt | 99.2007 | 99.6556 | 98.7500 | 40.5405 | 868 | 3 | 869 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5720 | 99.5845 | 99.5594 | 59.6473 | 27563 | 115 | 27568 | 122 | 11 | 9.0164 | |
| ltrigg-rtg2 | INDEL | * | map_siren | * | 98.2573 | 97.5304 | 98.9952 | 77.5300 | 7227 | 183 | 7192 | 73 | 11 | 15.0685 | |
| jmaeng-gatk | SNP | tv | HG002compoundhet | het | 99.2149 | 98.7160 | 99.7189 | 56.1374 | 4613 | 60 | 4611 | 13 | 11 | 84.6154 | |
| jmaeng-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.4801 | 99.6983 | 99.2628 | 67.4240 | 17515 | 53 | 17505 | 130 | 11 | 8.4615 | |
| jmaeng-gatk | SNP | tv | map_l100_m0_e0 | * | 81.7650 | 70.7957 | 96.7567 | 85.8314 | 7847 | 3237 | 7846 | 263 | 11 | 4.1825 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.9438 | 31.4961 | 78.4314 | 66.6667 | 40 | 87 | 40 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 68.8525 | 61.7647 | 77.7778 | 97.8947 | 42 | 26 | 42 | 12 | 11 | 91.6667 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 19.1153 | 11.0818 | 69.4915 | 82.2823 | 42 | 337 | 41 | 18 | 11 | 61.1111 | |
| ckim-vqsr | INDEL | D6_15 | HG002complexvar | homalt | 99.4466 | 99.9145 | 98.9831 | 63.0094 | 1168 | 1 | 1168 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.9827 | 89.0533 | 99.4898 | 29.9773 | 2107 | 259 | 2145 | 11 | 11 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.6667 | 99.0244 | 94.4186 | 91.1777 | 203 | 2 | 203 | 12 | 11 | 91.6667 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4862 | 100.0000 | 98.9777 | 68.5196 | 1065 | 0 | 1065 | 11 | 11 | 100.0000 | |
| ckim-vqsr | SNP | * | map_l100_m1_e0 | het | 85.1033 | 74.6313 | 98.9938 | 84.0158 | 33852 | 11507 | 33844 | 344 | 11 | 3.1977 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | * | 79.1409 | 75.8621 | 82.7160 | 87.3635 | 66 | 21 | 67 | 14 | 11 | 78.5714 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | * | 78.7116 | 75.5556 | 82.1429 | 87.8613 | 68 | 22 | 69 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6555 | 76.2887 | 83.3333 | 87.4652 | 74 | 23 | 75 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m1_e0 | * | 90.1237 | 87.9845 | 92.3695 | 84.8816 | 227 | 31 | 230 | 19 | 11 | 57.8947 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | * | 90.3524 | 88.2576 | 92.5490 | 85.5524 | 233 | 31 | 236 | 19 | 11 | 57.8947 | |
| egarrison-hhga | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.3511 | 82.9909 | 99.1438 | 40.2252 | 1737 | 356 | 1737 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 79.6791 | 72.3301 | 88.6905 | 83.5616 | 149 | 57 | 149 | 19 | 11 | 57.8947 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 67.7966 | 86.9565 | 55.5556 | 81.0526 | 20 | 3 | 20 | 16 | 11 | 68.7500 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.0301 | 71.4070 | 99.1727 | 30.3565 | 1888 | 756 | 1918 | 16 | 11 | 68.7500 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 92.3980 | 87.5241 | 97.8468 | 61.7037 | 5458 | 778 | 5635 | 124 | 11 | 8.8710 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.1980 | 95.1981 | 99.2838 | 34.4662 | 10884 | 549 | 10951 | 79 | 11 | 13.9241 | |
| ckim-isaac | SNP | * | map_siren | homalt | 81.0505 | 68.1522 | 99.9707 | 46.5592 | 37590 | 17566 | 37591 | 11 | 11 | 100.0000 | |
| ckim-isaac | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.6487 | 95.5751 | 99.8142 | 40.4145 | 9655 | 447 | 9670 | 18 | 11 | 61.1111 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3003 | 96.8730 | 99.7704 | 41.9223 | 6072 | 196 | 6083 | 14 | 11 | 78.5714 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 61.6652 | 61.3861 | 61.9469 | 89.2176 | 62 | 39 | 70 | 43 | 11 | 25.5814 | |
| ckim-isaac | SNP | tv | HG002compoundhet | homalt | 88.3010 | 79.3093 | 99.5923 | 36.8889 | 2687 | 701 | 2687 | 11 | 11 | 100.0000 | |
| ckim-vqsr | INDEL | * | map_l100_m1_e0 | het | 96.2709 | 95.7942 | 96.7524 | 90.3659 | 2141 | 94 | 2145 | 72 | 11 | 15.2778 | |
| ckim-vqsr | INDEL | * | map_l100_m2_e0 | het | 96.2758 | 95.7521 | 96.8053 | 90.9383 | 2209 | 98 | 2212 | 73 | 11 | 15.0685 | |