PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67951-68000 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e1 | het | 86.2385 | 100.0000 | 75.8065 | 94.4395 | 47 | 0 | 47 | 15 | 11 | 73.3333 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | het | 96.6790 | 99.4207 | 94.0844 | 84.2276 | 7894 | 46 | 7666 | 482 | 11 | 2.2822 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | * | 99.0106 | 99.6082 | 98.4201 | 77.7397 | 12712 | 50 | 12521 | 201 | 11 | 5.4726 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | het | 98.7761 | 99.4907 | 98.0716 | 79.3788 | 12307 | 63 | 12053 | 237 | 11 | 4.6414 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | het | 98.7657 | 99.5031 | 98.0391 | 80.4407 | 12817 | 64 | 12549 | 251 | 11 | 4.3825 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | het | 98.7627 | 99.5083 | 98.0281 | 80.5176 | 12951 | 64 | 12677 | 255 | 11 | 4.3137 | |
| eyeh-varpipe | SNP | tv | HG002complexvar | hetalt | 99.6700 | 99.6774 | 99.6626 | 29.8422 | 309 | 1 | 3545 | 12 | 11 | 91.6667 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 73.1615 | 86.6667 | 63.2979 | 89.1767 | 143 | 22 | 119 | 69 | 11 | 15.9420 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0184 | 98.5852 | 97.4582 | 45.8333 | 1742 | 25 | 1457 | 38 | 11 | 28.9474 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7540 | 99.8860 | 99.6224 | 56.8960 | 7011 | 8 | 6859 | 26 | 11 | 42.3077 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | het | 94.2875 | 99.6677 | 89.4585 | 75.0937 | 7198 | 24 | 7137 | 841 | 11 | 1.3080 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | * | 96.4575 | 99.6230 | 93.4869 | 79.0795 | 6606 | 25 | 6574 | 458 | 11 | 2.4018 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | het | 96.1715 | 99.6977 | 92.8862 | 79.2854 | 6925 | 21 | 6855 | 525 | 11 | 2.0952 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | het | 96.2702 | 99.7104 | 93.0595 | 80.3258 | 7231 | 21 | 7160 | 534 | 11 | 2.0599 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | het | 96.3036 | 99.7142 | 93.1185 | 80.3759 | 7327 | 21 | 7253 | 536 | 11 | 2.0522 | |
| eyeh-varpipe | SNP | tv | segdup | * | 97.0429 | 99.8476 | 94.3914 | 91.6933 | 8519 | 13 | 8398 | 499 | 11 | 2.2044 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.1872 | 94.4745 | 95.9108 | 49.8134 | 872 | 51 | 258 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | * | segdup | homalt | 98.7493 | 98.7500 | 98.7487 | 93.7209 | 948 | 12 | 947 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.7538 | 63.8444 | 96.2069 | 68.5125 | 279 | 158 | 279 | 11 | 11 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 85.3906 | 75.6471 | 98.0153 | 59.9388 | 643 | 207 | 642 | 13 | 11 | 84.6154 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 64.6064 | 50.2642 | 90.4008 | 85.4064 | 856 | 847 | 857 | 91 | 11 | 12.0879 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.4366 | 54.9763 | 90.6250 | 82.2960 | 116 | 95 | 116 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 92.5120 | 87.0957 | 98.6467 | 70.2422 | 5386 | 798 | 5394 | 74 | 11 | 14.8649 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 92.0208 | 86.8227 | 97.8809 | 74.0738 | 3413 | 518 | 3418 | 74 | 11 | 14.8649 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 89.2731 | 80.7561 | 99.7985 | 45.8371 | 5447 | 1298 | 5447 | 11 | 11 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | * | 58.2240 | 41.2034 | 99.2037 | 94.0967 | 3239 | 4622 | 3239 | 26 | 11 | 42.3077 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.0473 | 70.6121 | 97.9019 | 63.3528 | 3311 | 1378 | 3313 | 71 | 11 | 15.4930 | |
| gduggal-bwaplat | SNP | tv | segdup | * | 98.5186 | 97.8083 | 99.2394 | 94.9737 | 8345 | 187 | 8350 | 64 | 11 | 17.1875 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 34.2857 | 26.0870 | 50.0000 | 38.4615 | 12 | 34 | 12 | 12 | 11 | 91.6667 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.7794 | 88.9764 | 86.6142 | 67.2680 | 113 | 14 | 110 | 17 | 11 | 64.7059 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e0 | * | 88.3436 | 87.8049 | 88.8889 | 89.8462 | 72 | 10 | 88 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | * | 88.0187 | 87.0588 | 89.0000 | 89.9598 | 74 | 11 | 89 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.8881 | 14.3987 | 91.6667 | 67.0000 | 91 | 541 | 121 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 70.0000 | 99.9063 | 0 | 0 | 28 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | I1_5 | * | homalt | 95.1435 | 90.7626 | 99.9687 | 33.2973 | 54846 | 5582 | 54343 | 17 | 11 | 64.7059 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 72.1859 | 74.1259 | 70.3448 | 95.1146 | 106 | 37 | 102 | 43 | 11 | 25.5814 | |
| gduggal-bwavard | SNP | * | map_l125_m0_e0 | homalt | 98.3897 | 97.0501 | 99.7668 | 70.8893 | 6514 | 198 | 6417 | 15 | 11 | 73.3333 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.8320 | 92.1659 | 99.8018 | 61.7166 | 10647 | 905 | 10577 | 21 | 11 | 52.3810 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.8320 | 92.1659 | 99.8018 | 61.7166 | 10647 | 905 | 10577 | 21 | 11 | 52.3810 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0866 | 98.7946 | 99.3804 | 48.6184 | 4016 | 49 | 4010 | 25 | 11 | 44.0000 | |
| gduggal-bwavard | SNP | ti | map_l100_m0_e0 | homalt | 98.3810 | 96.9900 | 99.8126 | 63.0879 | 7540 | 234 | 7457 | 14 | 11 | 78.5714 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.0619 | 97.7461 | 96.3872 | 69.9220 | 2125 | 49 | 2081 | 78 | 11 | 14.1026 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.0740 | 97.6929 | 94.5078 | 73.4922 | 1355 | 32 | 1325 | 77 | 11 | 14.2857 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | homalt | 98.7765 | 97.7209 | 99.8553 | 63.6981 | 9004 | 210 | 8971 | 13 | 11 | 84.6154 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | homalt | 98.7497 | 97.6672 | 99.8565 | 63.7165 | 9085 | 217 | 9047 | 13 | 11 | 84.6154 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | * | 91.9264 | 90.6615 | 93.2271 | 91.6942 | 466 | 48 | 468 | 34 | 11 | 32.3529 | |
| gduggal-bwafb | SNP | tv | map_l250_m1_e0 | het | 96.5517 | 96.3626 | 96.7416 | 89.4306 | 1722 | 65 | 1722 | 58 | 11 | 18.9655 | |
| gduggal-bwafb | SNP | tv | map_l250_m2_e0 | het | 96.7209 | 96.5464 | 96.8960 | 89.9730 | 1873 | 67 | 1873 | 60 | 11 | 18.3333 | |
| gduggal-bwafb | SNP | tv | map_l250_m2_e1 | het | 96.7380 | 96.5903 | 96.8862 | 90.0589 | 1898 | 67 | 1898 | 61 | 11 | 18.0328 | |
| gduggal-bwafb | SNP | tv | map_siren | homalt | 99.6686 | 99.4490 | 99.8893 | 56.7363 | 17145 | 95 | 17145 | 19 | 11 | 57.8947 | |