PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67751-67800 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I6_15 | map_l250_m2_e1 | het | 54.7945 | 80.0000 | 41.6667 | 93.2203 | 4 | 1 | 10 | 14 | 10 | 71.4286 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3051 | 97.3787 | 93.3180 | 50.0419 | 4495 | 121 | 4455 | 319 | 10 | 3.1348 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.8784 | 97.2530 | 87.0667 | 62.6011 | 2372 | 67 | 2336 | 347 | 10 | 2.8818 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 86.9377 | 80.6789 | 94.2492 | 85.0311 | 309 | 74 | 295 | 18 | 10 | 55.5556 | |
| gduggal-snapvard | SNP | tv | func_cds | * | 98.8510 | 98.5129 | 99.1913 | 36.1464 | 4306 | 65 | 4293 | 35 | 10 | 28.5714 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.3664 | 93.9516 | 62.9198 | 85.7017 | 932 | 60 | 918 | 541 | 10 | 1.8484 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 40.3265 | 76.3636 | 27.3973 | 91.1318 | 126 | 39 | 120 | 318 | 10 | 3.1447 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 89.9292 | 85.2071 | 95.2055 | 89.4101 | 432 | 75 | 417 | 21 | 10 | 47.6190 | |
| gduggal-snapvard | SNP | tv | map_l100_m1_e0 | homalt | 98.2646 | 96.7599 | 99.8168 | 61.4274 | 8750 | 293 | 8718 | 16 | 10 | 62.5000 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | het | 85.3147 | 96.3158 | 76.5690 | 97.3834 | 183 | 7 | 183 | 56 | 10 | 17.8571 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | het | 86.0169 | 96.6667 | 77.4809 | 97.4752 | 203 | 7 | 203 | 59 | 10 | 16.9492 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e1 | het | 86.0759 | 96.6825 | 77.5665 | 97.5340 | 204 | 7 | 204 | 59 | 10 | 16.9492 | |
| ghariani-varprowl | INDEL | D1_5 | func_cds | * | 91.6923 | 93.7107 | 89.7590 | 41.3428 | 149 | 10 | 149 | 17 | 10 | 58.8235 | |
| ghariani-varprowl | INDEL | D1_5 | func_cds | het | 91.3978 | 100.0000 | 84.1584 | 48.7310 | 85 | 0 | 85 | 16 | 10 | 62.5000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | * | 90.8918 | 96.5726 | 85.8423 | 90.8419 | 479 | 17 | 479 | 79 | 10 | 12.6582 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 48.6558 | 37.7049 | 68.5714 | 84.9138 | 23 | 38 | 24 | 11 | 10 | 90.9091 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 72.0930 | 68.8889 | 75.6098 | 76.1628 | 31 | 14 | 31 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | het | 93.5860 | 98.4663 | 89.1667 | 91.2643 | 321 | 5 | 321 | 39 | 10 | 25.6410 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5153 | 97.3778 | 99.6797 | 71.5507 | 6536 | 176 | 6536 | 21 | 10 | 47.6190 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2784 | 99.5607 | 95.0984 | 65.7462 | 2946 | 13 | 2949 | 152 | 10 | 6.5790 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.2514 | 99.9113 | 98.6002 | 57.2710 | 1127 | 1 | 1127 | 16 | 10 | 62.5000 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | homalt | 98.9754 | 98.1605 | 99.8038 | 62.7769 | 7631 | 143 | 7631 | 15 | 10 | 66.6667 | |
| ghariani-varprowl | SNP | ti | map_l150_m1_e0 | homalt | 98.9885 | 98.1711 | 99.8196 | 71.5110 | 7193 | 134 | 7193 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e0 | homalt | 99.0272 | 98.2405 | 99.8266 | 73.7644 | 7482 | 134 | 7482 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | ti | map_l150_m2_e1 | homalt | 99.0304 | 98.2452 | 99.8283 | 73.7883 | 7558 | 135 | 7558 | 13 | 10 | 76.9231 | |
| ghariani-varprowl | SNP | tv | HG002compoundhet | het | 78.1241 | 90.1776 | 68.9129 | 69.5656 | 4214 | 459 | 4336 | 1956 | 10 | 0.5112 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 83.8710 | 95.1220 | 75.0000 | 93.0667 | 39 | 2 | 39 | 13 | 10 | 76.9231 | |
| gduggal-snapplat | SNP | ti | HG002complexvar | hetalt | 90.1007 | 85.9903 | 94.6237 | 41.1392 | 178 | 29 | 176 | 10 | 10 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.3175 | 87.0886 | 87.5476 | 72.9553 | 1376 | 204 | 1378 | 196 | 10 | 5.1020 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 37.3402 | 48.0263 | 30.5439 | 97.0255 | 73 | 79 | 73 | 166 | 10 | 6.0241 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.7260 | 86.6888 | 0 | 0 | 47 | 234 | 10 | 4.2735 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 76.8743 | 65.1163 | 93.8144 | 55.2995 | 168 | 90 | 182 | 12 | 10 | 83.3333 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.1833 | 90.4762 | 93.9560 | 39.3333 | 418 | 44 | 171 | 11 | 10 | 90.9091 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 69.8354 | 74.6667 | 65.5914 | 51.8135 | 56 | 19 | 61 | 32 | 10 | 31.2500 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 73.7705 | 60.1604 | 95.3390 | 57.0128 | 225 | 149 | 225 | 11 | 10 | 90.9091 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.2592 | 83.7329 | 86.8421 | 25.4902 | 489 | 95 | 66 | 10 | 10 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.6779 | 97.8306 | 97.5258 | 65.0198 | 947 | 21 | 946 | 24 | 10 | 41.6667 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 63.9370 | 50.2304 | 87.9310 | 40.5128 | 109 | 108 | 102 | 14 | 10 | 71.4286 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | het | 93.6061 | 96.2825 | 91.0744 | 94.8537 | 518 | 20 | 551 | 54 | 10 | 18.5185 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 42.8116 | 28.1132 | 89.7196 | 42.4731 | 149 | 381 | 96 | 11 | 10 | 90.9091 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 35.4132 | 25.4237 | 58.3333 | 64.1791 | 15 | 44 | 14 | 10 | 10 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 69.2765 | 58.7912 | 84.3137 | 82.8571 | 321 | 225 | 430 | 80 | 10 | 12.5000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m0_e0 | * | 82.2615 | 77.8547 | 87.1972 | 95.7884 | 225 | 64 | 252 | 37 | 10 | 27.0270 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | homalt | 91.2889 | 88.3008 | 94.4862 | 94.9101 | 317 | 42 | 377 | 22 | 10 | 45.4545 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 26.8433 | 15.6323 | 94.9091 | 54.3189 | 267 | 1441 | 261 | 14 | 10 | 71.4286 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 21.9561 | 12.5000 | 90.1639 | 55.1471 | 109 | 763 | 110 | 12 | 10 | 83.3333 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 23.7011 | 34.8943 | 17.9449 | 88.9091 | 231 | 431 | 241 | 1102 | 10 | 0.9074 | |
| gduggal-snapplat | INDEL | I1_5 | map_siren | het | 80.2443 | 77.5134 | 83.1746 | 91.4579 | 1303 | 378 | 1310 | 265 | 10 | 3.7736 | |
| gduggal-snapplat | INDEL | I6_15 | HG002complexvar | het | 33.8586 | 23.3121 | 61.8312 | 60.5350 | 549 | 1806 | 520 | 321 | 10 | 3.1153 | |
| anovak-vg | INDEL | I1_5 | map_l100_m0_e0 | het | 47.2130 | 37.7301 | 63.0631 | 92.0173 | 123 | 203 | 140 | 82 | 10 | 12.1951 | |