PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
67601-67650 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | * | 97.6817 | 98.1855 | 97.1831 | 88.7182 | 487 | 9 | 621 | 18 | 10 | 55.5556 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | homalt | 97.9462 | 98.2808 | 97.6139 | 87.6142 | 343 | 6 | 450 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.0337 | 98.3516 | 97.7178 | 87.9259 | 358 | 6 | 471 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.0724 | 98.3871 | 97.7597 | 87.9775 | 366 | 6 | 480 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 42.5806 | 29.7297 | 75.0000 | 50.4762 | 44 | 104 | 39 | 13 | 10 | 76.9231 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | homalt | 76.3271 | 79.1667 | 73.6842 | 90.0262 | 19 | 5 | 28 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | homalt | 81.4394 | 83.3333 | 79.6296 | 89.0909 | 30 | 6 | 43 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | homalt | 81.6539 | 83.7838 | 79.6296 | 89.2644 | 31 | 6 | 43 | 11 | 10 | 90.9091 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 14.2857 | 68.1818 | 0 | 87 | 2 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 19.3536 | 10.8571 | 89.0110 | 49.7238 | 19 | 156 | 81 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m1_e0 | het | 97.4411 | 97.3251 | 97.5575 | 83.6658 | 473 | 13 | 679 | 17 | 10 | 58.8235 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | het | 97.4137 | 97.1831 | 97.6454 | 84.4497 | 483 | 14 | 705 | 17 | 10 | 58.8235 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | * | 97.6695 | 97.3025 | 98.0392 | 88.0317 | 505 | 14 | 800 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | * | 97.7120 | 97.3635 | 98.0630 | 88.1407 | 517 | 14 | 810 | 16 | 10 | 62.5000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 79.6906 | 72.0588 | 89.1304 | 56.8075 | 49 | 19 | 82 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | het | 79.4144 | 72.8814 | 87.2340 | 74.7312 | 43 | 16 | 82 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | het | 79.0220 | 72.1311 | 87.3684 | 76.1905 | 44 | 17 | 83 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | het | 79.0220 | 72.1311 | 87.3684 | 76.4851 | 44 | 17 | 83 | 12 | 10 | 83.3333 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 93.4068 | 87.9802 | 99.5467 | 30.4101 | 7122 | 973 | 2196 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 91.8646 | 85.7424 | 98.9282 | 41.1728 | 6098 | 1014 | 923 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 18.4100 | 10.6796 | 66.6667 | 69.1589 | 22 | 184 | 22 | 11 | 10 | 90.9091 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 53.5912 | 38.5935 | 87.6543 | 68.1102 | 225 | 358 | 71 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 40.0000 | 26.4045 | 82.4561 | 61.2245 | 47 | 131 | 47 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 32.0388 | 20.3704 | 75.0000 | 58.7629 | 22 | 86 | 30 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 30.9742 | 18.7970 | 87.9518 | 64.6809 | 25 | 108 | 73 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 37.1824 | 23.5849 | 87.8049 | 62.7273 | 25 | 81 | 72 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6173 | 93.5146 | 97.8166 | 73.7084 | 447 | 31 | 448 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.1652 | 97.0888 | 99.2658 | 70.8788 | 1334 | 40 | 1352 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | het | 97.2030 | 95.6573 | 98.7995 | 79.6283 | 1608 | 73 | 1646 | 20 | 10 | 50.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 63.0031 | 47.3585 | 94.0828 | 47.0219 | 251 | 279 | 159 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 78.6765 | 69.9346 | 89.9160 | 64.3713 | 107 | 46 | 107 | 12 | 10 | 83.3333 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8486 | 99.6390 | 98.0706 | 65.3592 | 3864 | 14 | 3863 | 76 | 10 | 13.1579 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4567 | 99.7995 | 97.1496 | 66.8736 | 2489 | 5 | 2488 | 73 | 10 | 13.6986 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7040 | 99.5894 | 99.8189 | 55.7321 | 6063 | 25 | 6063 | 11 | 10 | 90.9091 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.1538 | 84.6154 | 69.2308 | 93.9943 | 121 | 22 | 117 | 52 | 10 | 19.2308 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4445 | 99.7009 | 99.1894 | 39.5064 | 7333 | 22 | 7342 | 60 | 10 | 16.6667 | |
| gduggal-bwafb | SNP | * | map_l100_m0_e0 | homalt | 99.4296 | 99.0017 | 99.8611 | 65.4925 | 11504 | 116 | 11504 | 16 | 10 | 62.5000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0040 | 98.6760 | 99.3342 | 81.0100 | 2385 | 32 | 2387 | 16 | 10 | 62.5000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.1653 | 98.5252 | 99.8138 | 69.6830 | 45028 | 674 | 45028 | 84 | 10 | 11.9048 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.1653 | 98.5252 | 99.8138 | 69.6830 | 45028 | 674 | 45028 | 84 | 10 | 11.9048 | |
| hfeng-pmm1 | SNP | * | map_l100_m0_e0 | homalt | 99.7374 | 99.7074 | 99.7675 | 63.8562 | 11586 | 34 | 11586 | 27 | 10 | 37.0370 | |
| hfeng-pmm1 | SNP | * | map_l150_m1_e0 | homalt | 99.7516 | 99.7427 | 99.7604 | 71.3075 | 11244 | 29 | 11244 | 27 | 10 | 37.0370 | |
| hfeng-pmm1 | SNP | * | map_l150_m2_e0 | homalt | 99.7606 | 99.7521 | 99.7692 | 73.4870 | 11670 | 29 | 11670 | 27 | 10 | 37.0370 | |
| hfeng-pmm1 | SNP | * | map_l150_m2_e1 | homalt | 99.7632 | 99.7548 | 99.7717 | 73.5145 | 11798 | 29 | 11798 | 27 | 10 | 37.0370 | |
| hfeng-pmm1 | SNP | * | map_l250_m1_e0 | het | 98.4804 | 98.1283 | 98.8350 | 88.4918 | 4666 | 89 | 4666 | 55 | 10 | 18.1818 | |
| hfeng-pmm1 | SNP | ti | HG002complexvar | het | 99.8377 | 99.6899 | 99.9860 | 16.6225 | 313790 | 976 | 313739 | 44 | 10 | 22.7273 | |
| hfeng-pmm1 | SNP | ti | map_l250_m1_e0 | * | 98.9508 | 98.8644 | 99.0374 | 88.1947 | 4527 | 52 | 4527 | 44 | 10 | 22.7273 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e0 | * | 99.0408 | 98.9617 | 99.1200 | 88.5996 | 4956 | 52 | 4956 | 44 | 10 | 22.7273 | |
| hfeng-pmm1 | SNP | ti | map_l250_m2_e1 | * | 99.0337 | 98.9362 | 99.1315 | 88.6771 | 5022 | 54 | 5022 | 44 | 10 | 22.7273 | |
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4519 | 98.9956 | 99.9125 | 62.9106 | 27400 | 278 | 27391 | 24 | 10 | 41.6667 | |