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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
67301-67350 / 86044 show all
ckim-isaacINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
82.2286
71.0963
97.4943
44.8492
4281744281110
90.9091
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
83.2773
71.8970
98.9378
35.0419
122848013041410
71.4286
ckim-isaacINDELD6_15map_siren*
68.4305
53.2417
95.7447
78.2743
2712382701210
83.3333
ckim-isaacINDELI16_PLUSHG002complexvarhetalt
38.7208
24.7761
88.5714
62.2302
83252931210
83.3333
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
97.2920
97.3799
97.2043
69.4213
13383613563910
25.6410
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9116
99.9214
99.9018
54.3272
101708101701010
100.0000
ckim-vqsrINDELI16_PLUS*het
98.1949
97.2774
99.1298
76.5400
26447426202310
43.4783
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.6522
99.1803
92.3664
87.2444
12111211010
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
94.6645
92.0290
97.4555
73.3740
381333831010
100.0000
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
94.2085
91.0448
97.6000
62.4906
488484881210
83.3333
ckim-vqsrSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1361
98.7615
99.5135
67.2304
47055947052310
43.4783
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4293
99.3243
99.5345
87.4555
23521623521110
90.9091
ckim-vqsrSNPtimap_l100_m1_e0het
85.6453
75.3523
99.1953
82.9534
2256273802255718310
5.4645
ltrigg-rtg2SNPtimap_l125_m1_e0*
98.9923
98.1217
99.8786
58.7041
28784551287853510
28.5714
ltrigg-rtg2SNPtimap_l125_m2_e0*
99.0101
98.1724
99.8622
61.4718
29705553297074110
24.3902
ltrigg-rtg2SNPtimap_l125_m2_e1*
99.0186
98.1877
99.8636
61.5506
30015554300184110
24.3902
mlin-fermikitINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
68.4211
86.6667
56.5217
98.1437
132131010
100.0000
mlin-fermikitINDELD16_PLUSmap_l100_m2_e1het
62.2222
66.6667
58.3333
92.7449
3417352510
40.0000
ndellapenna-hhgaINDELI16_PLUSmap_siren*
81.0503
79.0698
83.1325
85.7143
6818691410
71.4286
ndellapenna-hhgaINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.7132
98.1565
99.2762
66.6200
26094926061910
52.6316
ndellapenna-hhgaINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
94.0508
90.1716
98.2788
45.2919
578635711010
100.0000
ndellapenna-hhgaSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.0531
98.7414
99.3667
63.5237
17262217261110
90.9091
ndellapenna-hhgaSNP*map_l150_m1_e0homalt
99.6799
99.4589
99.9020
69.8014
1121261112121110
90.9091
ndellapenna-hhgaSNP*map_l150_m2_e0homalt
99.6916
99.4786
99.9056
72.3853
1163861116381110
90.9091
ndellapenna-hhgaSNP*map_l150_m2_e1homalt
99.6950
99.4842
99.9066
72.4121
1176661117661110
90.9091
ndellapenna-hhgaSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.4390
98.0603
98.8206
66.9267
31856331843810
26.3158
ndellapenna-hhgaSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
92.8623
89.4444
96.5517
85.0649
644766442310
43.4783
ndellapenna-hhgaSNPtilowcmp_SimpleRepeat_diTR_11to50het
97.9224
96.5693
99.3139
68.5406
304010830402110
47.6190
ndellapenna-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
95.6376
93.6473
97.7143
85.3434
855588552010
50.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.1773
98.9247
99.4312
56.1924
17481917481010
100.0000
ndellapenna-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.7292
99.5876
99.8713
60.0265
1086645108661410
71.4286
ndellapenna-hhgaSNPtvmap_l150_m0_e0het
97.8428
96.5178
99.2046
78.4007
27449927442210
45.4545
ndellapenna-hhgaSNPtvmap_l250_m1_e0*
97.8332
96.3733
99.3380
86.1787
25519625511710
58.8235
ndellapenna-hhgaSNPtvmap_l250_m2_e0*
97.9240
96.5649
99.3219
86.9151
27839927831910
52.6316
ndellapenna-hhgaSNPtvmap_l250_m2_e1*
97.9485
96.6049
99.3300
87.0027
28179928171910
52.6316
ndellapenna-hhgaSNPtvmap_sirenhomalt
99.8287
99.7274
99.9303
55.1755
1719347171931210
83.3333
qzeng-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.5178
99.1870
97.8576
69.7090
13421114163110
32.2581
qzeng-customINDEL*map_l125_m1_e0homalt
83.3361
73.4973
96.2162
85.8482
5381947122810
35.7143
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
92.5203
90.3553
94.7917
56.5611
178191821010
100.0000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
99.0268
98.8184
99.2361
41.7338
22582727282110
47.6190
qzeng-customINDELD1_5map_l250_m2_e0*
81.3204
72.2826
92.9412
97.5589
133511581210
83.3333
qzeng-customINDELD1_5map_l250_m2_e1*
81.4309
72.4324
92.9825
97.5939
134511591210
83.3333
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
89.1712
90.4306
87.9464
73.4911
189201972710
37.0370
qzeng-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
95.5179
97.5818
93.5395
36.9311
6861713619410
10.6383
qzeng-customINDELD6_15map_l100_m1_e0*
77.6887
86.0465
70.8108
85.0746
2223626210810
9.2593
qzeng-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
98.9865
98.4716
99.5069
53.0976
135321159417910
12.6582
qzeng-customINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
77.2082
72.8625
82.1053
86.6197
19673781710
58.8235
qzeng-customINDELI1_5map_l100_m0_e0*
78.8389
67.0350
95.6882
90.8414
3641795772610
38.4615
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
95.1923
92.5234
98.0198
73.2238
495404951010
100.0000
ndellapenna-hhgaINDEL*lowcmp_SimpleRepeat_triTR_11to50hetalt
81.2517
69.3391
98.1067
37.6609
6402835701110
90.9091