PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66951-67000 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | * | 97.2514 | 97.1849 | 97.3180 | 98.3412 | 1519 | 44 | 1524 | 42 | 9 | 21.4286 | |
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | het | 97.3464 | 97.2285 | 97.4646 | 85.8260 | 1298 | 37 | 1307 | 34 | 9 | 26.4706 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | het | 97.4161 | 97.2682 | 97.5645 | 86.6946 | 1353 | 38 | 1362 | 34 | 9 | 26.4706 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | het | 97.4472 | 97.3011 | 97.5938 | 86.8092 | 1370 | 38 | 1379 | 34 | 9 | 26.4706 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | * | 97.6748 | 97.2347 | 98.1189 | 98.7054 | 1301 | 37 | 1304 | 25 | 9 | 36.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | * | 97.7543 | 97.3011 | 98.2117 | 98.7639 | 1370 | 38 | 1373 | 25 | 9 | 36.0000 | |
| ndellapenna-hhga | INDEL | * | segdup | homalt | 99.1684 | 99.3750 | 98.9627 | 93.3714 | 954 | 6 | 954 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | * | 84.5587 | 83.9161 | 85.2113 | 88.7658 | 120 | 23 | 121 | 21 | 9 | 42.8571 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.0173 | 97.5541 | 98.4848 | 77.3439 | 1037 | 26 | 1040 | 16 | 9 | 56.2500 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m1_e0 | het | 97.7235 | 97.6013 | 97.8459 | 81.5387 | 1180 | 29 | 1181 | 26 | 9 | 34.6154 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e0 | het | 97.8087 | 97.6911 | 97.9266 | 82.2279 | 1227 | 29 | 1228 | 26 | 9 | 34.6154 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m2_e1 | het | 97.7909 | 97.7129 | 97.8690 | 82.3415 | 1239 | 29 | 1240 | 27 | 9 | 33.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9203 | 97.9167 | 97.9239 | 65.8796 | 564 | 12 | 566 | 12 | 9 | 75.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2552 | 98.0301 | 98.4813 | 61.4241 | 846 | 17 | 843 | 13 | 9 | 69.2308 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.2691 | 51.0539 | 98.5788 | 38.7173 | 872 | 836 | 763 | 11 | 9 | 81.8182 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e1 | het | 93.0123 | 97.0370 | 89.3082 | 87.6072 | 131 | 4 | 142 | 17 | 9 | 52.9412 | |
| ndellapenna-hhga | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.0250 | 82.3698 | 99.2490 | 40.2898 | 1724 | 369 | 1718 | 13 | 9 | 69.2308 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.1171 | 86.7925 | 83.5052 | 83.2470 | 92 | 14 | 81 | 16 | 9 | 56.2500 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 86.0038 | 78.1362 | 95.6332 | 65.1976 | 218 | 61 | 219 | 10 | 9 | 90.0000 | |
| ltrigg-rtg2 | SNP | tv | * | hetalt | 99.2565 | 99.5408 | 98.9738 | 40.5020 | 867 | 4 | 868 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_siren | * | 99.4071 | 99.1030 | 99.7130 | 49.8109 | 45518 | 412 | 45517 | 131 | 9 | 6.8702 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.3980 | 95.0820 | 86.1538 | 71.6157 | 58 | 3 | 56 | 9 | 9 | 100.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1212 | 96.7368 | 99.5458 | 35.0221 | 2668 | 90 | 2630 | 12 | 9 | 75.0000 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e0 | homalt | 98.0723 | 96.4102 | 99.7927 | 68.8173 | 5801 | 216 | 5778 | 12 | 9 | 75.0000 | |
| gduggal-snapvard | SNP | tv | map_l125_m2_e1 | homalt | 98.0309 | 96.3286 | 99.7943 | 68.8883 | 5851 | 223 | 5823 | 12 | 9 | 75.0000 | |
| ghariani-varprowl | INDEL | * | map_l100_m2_e1 | homalt | 94.7241 | 91.8033 | 97.8369 | 80.2368 | 1176 | 105 | 1176 | 26 | 9 | 34.6154 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 55.8190 | 40.4348 | 90.0990 | 79.0021 | 93 | 137 | 91 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m0_e0 | het | 89.3281 | 98.2609 | 81.8841 | 92.0000 | 339 | 6 | 339 | 75 | 9 | 12.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.8841 | 77.2727 | 96.6555 | 54.2813 | 289 | 85 | 289 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.5652 | 66.6667 | 72.7273 | 99.4295 | 38 | 19 | 40 | 15 | 9 | 60.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | het | 93.1419 | 97.6589 | 89.0244 | 93.6692 | 292 | 7 | 292 | 36 | 9 | 25.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e0 | het | 93.0663 | 97.7346 | 88.8235 | 94.2157 | 302 | 7 | 302 | 38 | 9 | 23.6842 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | het | 93.0931 | 97.7918 | 88.8252 | 94.2352 | 310 | 7 | 310 | 39 | 9 | 23.0769 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 78.5083 | 73.5294 | 84.2105 | 64.3750 | 50 | 18 | 48 | 9 | 9 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.3103 | 11.2903 | 66.6667 | 90.9366 | 21 | 165 | 20 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.2728 | 88.8112 | 66.8367 | 94.9485 | 127 | 16 | 131 | 65 | 9 | 13.8462 | |
| ghariani-varprowl | SNP | ti | func_cds | * | 99.6201 | 99.8549 | 99.3864 | 28.0976 | 13767 | 20 | 13767 | 85 | 9 | 10.5882 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6463 | 99.5904 | 97.7199 | 44.7612 | 3890 | 16 | 3900 | 91 | 9 | 9.8901 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4433 | 100.0000 | 98.8927 | 33.8067 | 1427 | 0 | 1429 | 16 | 9 | 56.2500 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0203 | 98.2985 | 99.7527 | 60.4577 | 10919 | 189 | 10893 | 27 | 9 | 33.3333 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | * | 98.1895 | 97.4902 | 98.8989 | 82.4896 | 3496 | 90 | 3503 | 39 | 9 | 23.0769 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | * | 98.1873 | 97.4817 | 98.9032 | 83.5913 | 3600 | 93 | 3607 | 40 | 9 | 22.5000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | * | 98.1906 | 97.4707 | 98.9213 | 83.6789 | 3661 | 95 | 3668 | 40 | 9 | 22.5000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 34.9312 | 22.1925 | 82.0000 | 62.4060 | 83 | 291 | 41 | 9 | 9 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 25.7312 | 15.1242 | 86.1538 | 28.5714 | 67 | 376 | 56 | 9 | 9 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 14.9034 | 8.1164 | 90.9910 | 51.3158 | 53 | 600 | 101 | 10 | 9 | 90.0000 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | homalt | 96.4845 | 93.6663 | 99.4776 | 87.2382 | 2307 | 156 | 2285 | 12 | 9 | 75.0000 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e0 | homalt | 96.5678 | 93.8198 | 99.4817 | 88.0057 | 2520 | 166 | 2495 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | SNP | * | map_l250_m2_e1 | homalt | 96.5507 | 93.7822 | 99.4876 | 88.0830 | 2549 | 169 | 2524 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.5046 | 97.6173 | 99.4081 | 39.4232 | 3892 | 95 | 3863 | 23 | 9 | 39.1304 | |