PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66701-66750 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.5342 | 62.5000 | 92.3077 | 80.9663 | 70 | 42 | 120 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 91.7090 | 85.4430 | 98.9667 | 76.0780 | 270 | 46 | 862 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6471 | 99.1202 | 98.1785 | 85.0123 | 338 | 3 | 539 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6596 | 99.1254 | 98.1982 | 85.1326 | 340 | 3 | 545 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | * | 76.9628 | 67.9245 | 88.7755 | 80.5169 | 36 | 17 | 87 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | * | 77.1277 | 67.9245 | 89.2157 | 81.4208 | 36 | 17 | 91 | 11 | 9 | 81.8182 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 79.6945 | 66.8919 | 98.5577 | 39.0625 | 99 | 49 | 615 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 81.0877 | 69.6203 | 97.0779 | 42.3221 | 440 | 192 | 299 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.7249 | 90.0709 | 97.6879 | 63.9583 | 508 | 56 | 507 | 12 | 9 | 75.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6955 | 99.6275 | 95.8371 | 67.9253 | 4279 | 16 | 4282 | 186 | 9 | 4.8387 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.5242 | 99.6649 | 93.5754 | 71.7749 | 2677 | 9 | 2680 | 184 | 9 | 4.8913 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2360 | 99.6967 | 98.7794 | 42.1600 | 4602 | 14 | 4613 | 57 | 9 | 15.7895 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 96.0249 | 95.0450 | 97.0252 | 86.7656 | 422 | 22 | 424 | 13 | 9 | 69.2308 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7130 | 99.7766 | 99.6495 | 46.4322 | 6254 | 14 | 6254 | 22 | 9 | 40.9091 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7826 | 85.1485 | 66.6667 | 94.5791 | 86 | 15 | 82 | 41 | 9 | 21.9512 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | * | 97.5073 | 97.0803 | 97.9381 | 93.5330 | 1330 | 40 | 1330 | 28 | 9 | 32.1429 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4977 | 97.4798 | 88.0000 | 79.7980 | 967 | 25 | 968 | 132 | 9 | 6.8182 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 80.0548 | 89.0909 | 72.6829 | 91.6052 | 147 | 18 | 149 | 56 | 9 | 16.0714 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 72.8617 | 57.7406 | 98.7124 | 51.8595 | 690 | 505 | 690 | 9 | 9 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | * | 94.1537 | 89.4757 | 99.3478 | 96.2604 | 2287 | 269 | 2285 | 15 | 9 | 60.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 90.5336 | 83.5805 | 98.7484 | 42.1852 | 789 | 155 | 789 | 10 | 9 | 90.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 70.9325 | 55.3834 | 98.6207 | 47.8042 | 715 | 576 | 715 | 10 | 9 | 90.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 37.5839 | 24.1033 | 85.2792 | 74.6461 | 168 | 529 | 168 | 29 | 9 | 31.0345 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 87.9523 | 78.9685 | 99.2424 | 47.1530 | 1179 | 314 | 1179 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | * | 77.1277 | 67.9245 | 89.2157 | 81.6876 | 36 | 17 | 91 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.9908 | 99.7206 | 92.5300 | 66.9362 | 4283 | 12 | 4162 | 336 | 9 | 2.6786 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.5435 | 99.8700 | 97.2518 | 40.3648 | 4610 | 6 | 4388 | 124 | 9 | 7.2581 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4797 | 98.7648 | 86.9467 | 79.4810 | 1999 | 25 | 1925 | 289 | 9 | 3.1142 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 73.3083 | 94.2029 | 60.0000 | 83.8710 | 65 | 4 | 57 | 38 | 9 | 23.6842 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7221 | 99.9521 | 99.4931 | 42.7028 | 6265 | 3 | 6281 | 32 | 9 | 28.1250 | |
| eyeh-varpipe | SNP | ti | segdup | homalt | 99.9189 | 99.9600 | 99.8777 | 88.4551 | 7502 | 3 | 7351 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5573 | 98.6641 | 94.5386 | 64.0244 | 517 | 7 | 502 | 29 | 9 | 31.0345 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | het | 94.8919 | 99.6364 | 90.5787 | 80.4588 | 4385 | 16 | 4336 | 451 | 9 | 1.9956 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.6327 | 100.0000 | 68.9655 | 99.9497 | 21 | 0 | 20 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.4768 | 80.1802 | 96.2343 | 47.0067 | 178 | 44 | 230 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | * | 96.8910 | 95.7753 | 98.0329 | 87.0344 | 2131 | 94 | 2143 | 43 | 9 | 20.9302 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.1377 | 91.6667 | 98.8820 | 71.9708 | 803 | 73 | 796 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | * | homalt | 99.3481 | 98.8935 | 99.8070 | 44.0385 | 6256 | 70 | 6207 | 12 | 9 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9814 | 98.5171 | 99.4501 | 63.2766 | 5514 | 83 | 5426 | 30 | 9 | 30.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0231 | 98.3802 | 99.6744 | 47.3579 | 3705 | 61 | 3674 | 12 | 9 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.4888 | 94.9264 | 98.1034 | 64.0867 | 580 | 31 | 569 | 11 | 9 | 81.8182 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0231 | 98.3802 | 99.6744 | 47.3579 | 3705 | 61 | 3674 | 12 | 9 | 75.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 87.0717 | 78.5417 | 97.6804 | 73.6054 | 377 | 103 | 379 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002complexvar | homalt | 99.5102 | 99.1299 | 99.8933 | 45.8849 | 13330 | 117 | 13110 | 14 | 9 | 64.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.7454 | 95.7670 | 99.8073 | 46.5308 | 4570 | 202 | 4661 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | HG002compoundhet | het | 98.6093 | 97.5384 | 99.7040 | 42.5144 | 13829 | 349 | 13809 | 41 | 9 | 21.9512 | |
| ltrigg-rtg1 | SNP | * | map_l150_m0_e0 | homalt | 99.5834 | 99.3886 | 99.7790 | 75.2221 | 4064 | 25 | 4063 | 9 | 9 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l150_m1_e0 | het | 98.3972 | 97.0957 | 99.7341 | 63.5971 | 18755 | 561 | 18755 | 50 | 9 | 18.0000 | |
| ltrigg-rtg1 | SNP | * | map_l150_m2_e0 | het | 98.4430 | 97.1937 | 99.7248 | 66.0349 | 19568 | 565 | 19569 | 54 | 9 | 16.6667 | |
| ltrigg-rtg1 | SNP | * | map_l150_m2_e1 | het | 98.4558 | 97.2204 | 99.7229 | 66.1731 | 19797 | 566 | 19797 | 55 | 9 | 16.3636 | |