PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66651-66700 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3403 | 97.9849 | 98.6982 | 87.4181 | 778 | 16 | 834 | 11 | 9 | 81.8182 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3270 | 99.3199 | 99.3340 | 66.8350 | 3067 | 21 | 3132 | 21 | 9 | 42.8571 | |
| cchapple-custom | SNP | tv | segdup | * | 99.5434 | 99.8008 | 99.2874 | 93.0362 | 8515 | 17 | 8499 | 61 | 9 | 14.7541 | |
| cchapple-custom | SNP | tv | segdup | homalt | 99.8144 | 99.9074 | 99.7215 | 89.1707 | 3235 | 3 | 3223 | 9 | 9 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.2821 | 100.0000 | 82.2857 | 92.5373 | 1 | 0 | 144 | 31 | 9 | 29.0323 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 85.5814 | 100.0000 | 74.7967 | 93.4119 | 1 | 0 | 92 | 31 | 9 | 29.0323 | |
| gduggal-bwavard | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 57.1429 | 94.8112 | 0 | 0 | 84 | 63 | 9 | 14.2857 | |
| gduggal-bwavard | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 46.6102 | 95.3025 | 0 | 0 | 55 | 63 | 9 | 14.2857 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 54.0000 | 96.6148 | 0 | 0 | 27 | 23 | 9 | 39.1304 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 79.6677 | 66.2895 | 99.8110 | 27.4375 | 4804 | 2443 | 4754 | 9 | 9 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | * | 90.7857 | 97.5806 | 84.8754 | 90.3137 | 484 | 12 | 477 | 85 | 9 | 10.5882 | |
| gduggal-bwavard | INDEL | I6_15 | HG002complexvar | homalt | 84.0374 | 73.1466 | 98.7385 | 35.6458 | 888 | 326 | 861 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 72.7828 | 81.3725 | 65.8333 | 95.3952 | 83 | 19 | 79 | 41 | 9 | 21.9512 | |
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.7481 | 97.6242 | 99.8981 | 43.0461 | 9862 | 240 | 9806 | 10 | 9 | 90.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | homalt | 98.6148 | 97.3744 | 99.8872 | 66.1535 | 10755 | 290 | 10628 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e0 | homalt | 98.6173 | 97.3763 | 99.8904 | 68.4929 | 11060 | 298 | 10932 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e1 | homalt | 98.6250 | 97.3905 | 99.8913 | 68.5234 | 11159 | 299 | 11030 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | homalt | 98.6247 | 97.4478 | 99.8303 | 71.2444 | 7140 | 187 | 7059 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | homalt | 98.6236 | 97.4396 | 99.8368 | 73.2710 | 7421 | 195 | 7339 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e1 | homalt | 98.6309 | 97.4522 | 99.8384 | 73.3079 | 7497 | 196 | 7414 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | tv | func_cds | * | 99.0223 | 98.5358 | 99.5136 | 36.8583 | 4307 | 64 | 4296 | 21 | 9 | 42.8571 | |
| gduggal-bwavard | SNP | tv | func_cds | het | 99.0001 | 98.7956 | 99.2054 | 42.2421 | 2625 | 32 | 2622 | 21 | 9 | 42.8571 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | homalt | 98.7755 | 97.7645 | 99.8076 | 66.5926 | 5729 | 131 | 5706 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | homalt | 98.7568 | 97.7231 | 99.8125 | 68.8568 | 5880 | 137 | 5857 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | homalt | 98.7179 | 97.6457 | 99.8140 | 68.9260 | 5931 | 143 | 5903 | 11 | 9 | 81.8182 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.7099 | 38.0000 | 67.8261 | 54.3651 | 19 | 31 | 78 | 37 | 9 | 24.3243 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | het | 91.8622 | 90.9710 | 92.7711 | 85.6224 | 534 | 53 | 539 | 42 | 9 | 21.4286 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | homalt | 96.9613 | 95.9016 | 98.0447 | 89.0553 | 702 | 30 | 702 | 14 | 9 | 64.2857 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | homalt | 97.0861 | 96.0682 | 98.1258 | 89.6192 | 733 | 30 | 733 | 14 | 9 | 64.2857 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | homalt | 97.1279 | 96.1240 | 98.1530 | 89.6772 | 744 | 30 | 744 | 14 | 9 | 64.2857 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 62.1803 | 46.4789 | 93.9024 | 80.7963 | 231 | 266 | 231 | 15 | 9 | 60.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 80.5781 | 70.7937 | 93.5010 | 80.1167 | 446 | 184 | 446 | 31 | 9 | 29.0323 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 61.6323 | 46.5246 | 91.2698 | 88.3076 | 917 | 1054 | 920 | 88 | 9 | 10.2273 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 61.6323 | 46.5246 | 91.2698 | 88.3076 | 917 | 1054 | 920 | 88 | 9 | 10.2273 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.3227 | 56.8627 | 88.7755 | 86.4454 | 87 | 66 | 87 | 11 | 9 | 81.8182 | |
| gduggal-bwaplat | SNP | * | map_siren | homalt | 86.1632 | 75.7053 | 99.9736 | 58.6738 | 41756 | 13400 | 41721 | 11 | 9 | 81.8182 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2539 | 90.8867 | 97.8801 | 82.7110 | 2952 | 296 | 2955 | 64 | 9 | 14.0625 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 68.8414 | 56.2500 | 88.6957 | 94.3586 | 405 | 315 | 408 | 52 | 9 | 17.3077 | |
| gduggal-bwaplat | SNP | ti | segdup | * | 98.6403 | 98.0243 | 99.2642 | 93.3166 | 19151 | 386 | 19157 | 142 | 9 | 6.3380 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 94.8454 | 0 | 0 | 44 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 81.6327 | 95.5046 | 0 | 0 | 40 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 12.5000 | 91.6230 | 0 | 0 | 2 | 14 | 9 | 64.2857 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 9.9949 | 5.3085 | 85.2941 | 78.6164 | 37 | 660 | 58 | 10 | 9 | 90.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 59.1341 | 47.0588 | 79.5455 | 96.0644 | 32 | 36 | 35 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.1319 | 69.2308 | 95.1076 | 60.6014 | 513 | 228 | 486 | 25 | 9 | 36.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.4825 | 55.4545 | 93.0108 | 50.6631 | 183 | 147 | 173 | 13 | 9 | 69.2308 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.9437 | 10.5927 | 89.5161 | 64.6724 | 84 | 709 | 111 | 13 | 9 | 69.2308 | |
| eyeh-varpipe | INDEL | D6_15 | map_l150_m1_e0 | * | 88.5933 | 87.6712 | 89.5349 | 90.3695 | 64 | 9 | 77 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 15.3846 | 12.0000 | 21.4286 | 44.0000 | 3 | 22 | 3 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 21.6364 | 12.9630 | 65.3846 | 59.3750 | 14 | 94 | 17 | 9 | 9 | 100.0000 | |