PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66501-66550 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 92.7783 | 91.2879 | 94.3182 | 84.3509 | 241 | 23 | 249 | 15 | 8 | 53.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 93.4443 | 94.0741 | 92.8230 | 84.6999 | 127 | 8 | 194 | 15 | 8 | 53.3333 | |
| cchapple-custom | INDEL | D6_15 | map_siren | het | 94.8724 | 94.6429 | 95.1031 | 81.6462 | 265 | 15 | 369 | 19 | 8 | 42.1053 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7872 | 99.6565 | 99.9183 | 57.2121 | 17118 | 59 | 17114 | 14 | 8 | 57.1429 | |
| ckim-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1672 | 98.9840 | 99.3511 | 65.9333 | 3215 | 33 | 3215 | 21 | 8 | 38.0952 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.4104 | 99.4573 | 99.3635 | 79.6751 | 4215 | 23 | 4215 | 27 | 8 | 29.6296 | |
| ckim-gatk | SNP | ti | map_l250_m1_e0 | * | 69.7981 | 54.3568 | 97.4931 | 96.0316 | 2489 | 2090 | 2489 | 64 | 8 | 12.5000 | |
| ckim-gatk | SNP | ti | map_l250_m1_e0 | het | 72.9254 | 58.6253 | 96.4523 | 96.6462 | 1740 | 1228 | 1740 | 64 | 8 | 12.5000 | |
| ckim-gatk | SNP | ti | segdup | * | 98.9344 | 99.3295 | 98.5425 | 92.9771 | 19406 | 131 | 19404 | 287 | 8 | 2.7875 | |
| ckim-gatk | SNP | tv | HG002complexvar | homalt | 99.2138 | 98.4513 | 99.9883 | 23.0317 | 93638 | 1473 | 93624 | 11 | 8 | 72.7273 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.2254 | 99.0858 | 99.3653 | 88.4800 | 1409 | 13 | 1409 | 9 | 8 | 88.8889 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.4448 | 99.3729 | 99.5169 | 82.8933 | 4120 | 26 | 4120 | 20 | 8 | 40.0000 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | * | 75.4506 | 61.8308 | 96.7658 | 90.3686 | 4100 | 2531 | 4099 | 137 | 8 | 5.8394 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5920 | 66.7348 | 95.5729 | 91.8237 | 2937 | 1464 | 2936 | 136 | 8 | 5.8824 | |
| ckim-gatk | SNP | tv | map_l150_m1_e0 | * | 79.1583 | 66.8988 | 96.9190 | 88.8068 | 7300 | 3612 | 7298 | 232 | 8 | 3.4483 | |
| ckim-gatk | SNP | tv | map_l150_m1_e0 | het | 83.3287 | 73.7979 | 95.6863 | 90.3850 | 5126 | 1820 | 5124 | 231 | 8 | 3.4632 | |
| ckim-gatk | SNP | tv | map_l150_m2_e0 | * | 79.8775 | 67.9260 | 96.9327 | 89.4279 | 7713 | 3642 | 7711 | 244 | 8 | 3.2787 | |
| ckim-gatk | SNP | tv | map_l150_m2_e0 | het | 83.9328 | 74.7380 | 95.7075 | 90.8782 | 5420 | 1832 | 5418 | 243 | 8 | 3.2922 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | * | 77.9687 | 64.4993 | 98.5486 | 87.4682 | 1359 | 748 | 1358 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | * | 78.3417 | 64.9818 | 98.6169 | 88.3010 | 1427 | 769 | 1426 | 20 | 8 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | * | 78.4183 | 65.0787 | 98.6367 | 88.3507 | 1448 | 777 | 1447 | 20 | 8 | 40.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.1740 | 97.0537 | 85.9659 | 38.7403 | 4480 | 136 | 4490 | 733 | 8 | 1.0914 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 63.5187 | 93.8508 | 48.0041 | 71.9172 | 931 | 61 | 938 | 1016 | 8 | 0.7874 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6285 | 99.8409 | 99.4171 | 72.8645 | 1883 | 3 | 1876 | 11 | 8 | 72.7273 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1924 | 95.1464 | 99.3283 | 34.1625 | 1137 | 58 | 1183 | 8 | 8 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | * | 95.5436 | 96.1451 | 94.9495 | 90.2750 | 848 | 34 | 846 | 45 | 8 | 17.7778 | |
| ckim-dragen | INDEL | * | map_l125_m2_e1 | het | 95.7012 | 96.4489 | 94.9650 | 90.2767 | 1358 | 50 | 1358 | 72 | 8 | 11.1111 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4329 | 96.3492 | 98.5413 | 62.2630 | 607 | 23 | 608 | 9 | 8 | 88.8889 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9760 | 98.3446 | 99.6155 | 65.8661 | 2614 | 44 | 2591 | 10 | 8 | 80.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | het | 96.5366 | 96.6538 | 96.4198 | 83.9921 | 751 | 26 | 781 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | het | 96.5400 | 96.5952 | 96.4848 | 85.2941 | 766 | 27 | 796 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | het | 96.6133 | 96.6667 | 96.5599 | 85.3595 | 783 | 27 | 814 | 29 | 8 | 27.5862 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.8610 | 91.4980 | 98.4807 | 64.9564 | 226 | 21 | 713 | 11 | 8 | 72.7273 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.0874 | 100.0000 | 94.3396 | 74.8418 | 153 | 0 | 150 | 9 | 8 | 88.8889 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.0504 | 96.7449 | 99.3916 | 61.8066 | 1278 | 43 | 1307 | 8 | 8 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6397 | 99.6465 | 99.6329 | 33.8966 | 7329 | 26 | 7327 | 27 | 8 | 29.6296 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5568 | 99.6967 | 99.4174 | 37.3360 | 4602 | 14 | 4607 | 27 | 8 | 29.6296 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | * | 94.5681 | 94.5098 | 94.6265 | 93.8008 | 723 | 42 | 722 | 41 | 8 | 19.5122 | |
| cchapple-custom | SNP | tv | map_l250_m0_e0 | het | 93.7547 | 94.5804 | 92.9432 | 94.2561 | 541 | 31 | 540 | 41 | 8 | 19.5122 | |
| ciseli-custom | INDEL | * | map_l250_m0_e0 | * | 55.0520 | 51.2821 | 59.4203 | 98.6428 | 40 | 38 | 41 | 28 | 8 | 28.5714 | |
| ciseli-custom | INDEL | * | map_l250_m1_e0 | homalt | 59.4286 | 47.7064 | 78.7879 | 96.7977 | 52 | 57 | 52 | 14 | 8 | 57.1429 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 29.6296 | 96.2238 | 0 | 0 | 8 | 19 | 8 | 42.1053 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 29.1667 | 95.9184 | 0 | 0 | 7 | 17 | 8 | 47.0588 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 96.1577 | 0 | 0 | 19 | 57 | 8 | 14.0351 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 19.6970 | 95.3092 | 0 | 0 | 13 | 53 | 8 | 15.0943 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.3731 | 95.8437 | 0 | 0 | 17 | 50 | 8 | 16.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 20.3390 | 94.8606 | 0 | 0 | 12 | 47 | 8 | 17.0213 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 75.4386 | 71.6667 | 79.6296 | 95.8365 | 43 | 17 | 43 | 11 | 8 | 72.7273 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 75.4386 | 71.6667 | 79.6296 | 95.9276 | 43 | 17 | 43 | 11 | 8 | 72.7273 | |
| ciseli-custom | INDEL | D6_15 | segdup | het | 78.3734 | 80.4348 | 76.4151 | 94.8494 | 74 | 18 | 81 | 25 | 8 | 32.0000 | |