PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
66151-66200 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | het | 92.9271 | 95.7746 | 90.2439 | 86.6667 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | het | 92.9271 | 95.7746 | 90.2439 | 86.9634 | 68 | 3 | 74 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 17.9104 | 10.5263 | 60.0000 | 67.7419 | 10 | 85 | 12 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 23.7730 | 13.6201 | 93.3884 | 56.4748 | 38 | 241 | 113 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 70.1097 | 58.8235 | 86.7550 | 74.5791 | 30 | 21 | 131 | 20 | 8 | 40.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | het | 97.5785 | 97.5460 | 97.6109 | 82.4235 | 318 | 8 | 572 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.4417 | 99.0385 | 97.8520 | 84.2540 | 206 | 2 | 410 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | * | 97.8142 | 97.4308 | 98.2005 | 87.3865 | 493 | 13 | 764 | 14 | 8 | 57.1429 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | het | 97.0200 | 96.4684 | 97.5779 | 93.5180 | 519 | 19 | 564 | 14 | 8 | 57.1429 | |
| gduggal-bwavard | INDEL | I6_15 | HG002compoundhet | homalt | 46.3972 | 38.7097 | 57.8947 | 75.6410 | 12 | 19 | 11 | 8 | 8 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | * | 72.2222 | 73.5849 | 70.9091 | 89.9818 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m1_e0 | het | 78.3784 | 96.6667 | 65.9091 | 91.0751 | 29 | 1 | 29 | 15 | 8 | 53.3333 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | * | 72.2222 | 73.5849 | 70.9091 | 91.2141 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e0 | het | 78.3784 | 96.6667 | 65.9091 | 92.1147 | 29 | 1 | 29 | 15 | 8 | 53.3333 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | * | 72.2222 | 73.5849 | 70.9091 | 91.4197 | 39 | 14 | 39 | 16 | 8 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m2_e1 | het | 78.3784 | 96.6667 | 65.9091 | 92.2807 | 29 | 1 | 29 | 15 | 8 | 53.3333 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 67.8971 | 71.2871 | 64.8148 | 95.6696 | 72 | 29 | 70 | 38 | 8 | 21.0526 | |
| gduggal-bwavard | SNP | tv | HG002compoundhet | homalt | 92.4344 | 86.2456 | 99.5802 | 40.9644 | 2922 | 466 | 2609 | 11 | 8 | 72.7273 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.4626 | 97.0981 | 99.8660 | 55.9944 | 9804 | 293 | 9692 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.8110 | 97.2305 | 94.4322 | 69.1595 | 1299 | 37 | 1289 | 76 | 8 | 10.5263 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.2250 | 97.0760 | 91.5367 | 74.6113 | 830 | 25 | 822 | 76 | 8 | 10.5263 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 81.4778 | 87.2727 | 76.4045 | 92.1551 | 144 | 21 | 136 | 42 | 8 | 19.0476 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | homalt | 96.1581 | 94.8052 | 97.5501 | 91.6231 | 438 | 24 | 438 | 11 | 8 | 72.7273 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | homalt | 96.3119 | 95.0104 | 97.6496 | 92.1345 | 457 | 24 | 457 | 11 | 8 | 72.7273 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | homalt | 96.3955 | 95.1220 | 97.7035 | 92.1035 | 468 | 24 | 468 | 11 | 8 | 72.7273 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | het | 96.8331 | 96.5739 | 97.0936 | 93.7967 | 902 | 32 | 902 | 27 | 8 | 29.6296 | |
| gduggal-bwafb | SNP | tv | segdup | homalt | 99.6445 | 99.5368 | 99.7524 | 90.8111 | 3223 | 15 | 3223 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.0770 | 67.4930 | 98.4290 | 83.1937 | 1443 | 695 | 1441 | 23 | 8 | 34.7826 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | het | 83.4500 | 72.3450 | 98.5824 | 93.3707 | 1669 | 638 | 1669 | 24 | 8 | 33.3333 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | het | 83.4646 | 72.3858 | 98.5474 | 93.4041 | 1696 | 647 | 1696 | 25 | 8 | 32.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 88.1747 | 79.7149 | 98.6431 | 65.5124 | 727 | 185 | 727 | 10 | 8 | 80.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 88.5850 | 80.2390 | 98.8688 | 62.7319 | 873 | 215 | 874 | 10 | 8 | 80.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.4669 | 80.2296 | 98.5893 | 38.6538 | 629 | 155 | 629 | 9 | 8 | 88.8889 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.3379 | 64.9675 | 95.5272 | 85.0988 | 599 | 323 | 598 | 28 | 8 | 28.5714 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 87.7517 | 81.7259 | 94.7368 | 67.1785 | 161 | 36 | 162 | 9 | 8 | 88.8889 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.2808 | 99.7163 | 94.9614 | 65.1121 | 3867 | 11 | 3694 | 196 | 8 | 4.0816 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 71.7070 | 89.4928 | 59.8187 | 91.4779 | 247 | 29 | 198 | 133 | 8 | 6.0150 | |
| eyeh-varpipe | SNP | * | map_l100_m0_e0 | homalt | 99.8121 | 99.7935 | 99.8307 | 65.9910 | 11596 | 24 | 11205 | 19 | 8 | 42.1053 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | homalt | 99.8338 | 99.7871 | 99.8804 | 73.5129 | 11249 | 24 | 10861 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | homalt | 99.8398 | 99.7949 | 99.8849 | 75.5076 | 11675 | 24 | 11277 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | homalt | 99.8415 | 99.7971 | 99.8860 | 75.5645 | 11803 | 24 | 11393 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | het | 98.4331 | 99.3060 | 97.5755 | 90.8816 | 4722 | 33 | 4588 | 114 | 8 | 7.0175 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | het | 98.5164 | 99.3647 | 97.6826 | 91.1394 | 5161 | 33 | 5016 | 119 | 8 | 6.7227 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | het | 98.4883 | 99.3731 | 97.6190 | 91.2048 | 5231 | 33 | 5084 | 124 | 8 | 6.4516 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | het | 98.5647 | 99.5038 | 97.6432 | 79.9389 | 8222 | 41 | 8079 | 195 | 8 | 4.1026 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | * | 95.6512 | 99.5927 | 92.0098 | 83.3079 | 4157 | 17 | 4134 | 359 | 8 | 2.2284 | |
| eyeh-varpipe | SNP | tv | map_siren | homalt | 99.8859 | 99.8782 | 99.8937 | 58.0270 | 17219 | 21 | 16916 | 18 | 8 | 44.4444 | |
| gduggal-bwafb | INDEL | * | func_cds | * | 95.8862 | 94.1573 | 97.6798 | 38.6040 | 419 | 26 | 421 | 10 | 8 | 80.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | het | 95.8207 | 93.7687 | 97.9645 | 83.6078 | 2197 | 146 | 2262 | 47 | 8 | 17.0213 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | * | 96.9083 | 95.7760 | 98.0676 | 85.9889 | 2018 | 89 | 2030 | 40 | 8 | 20.0000 | |