PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65851-65900 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D1_5 | HG002compoundhet | homalt | 95.9853 | 94.8454 | 97.1530 | 60.6993 | 276 | 15 | 273 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.3716 | 91.7119 | 99.3355 | 36.2626 | 1184 | 107 | 1196 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.7529 | 97.3236 | 98.1859 | 78.3718 | 400 | 11 | 433 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | HG002complexvar | het | 98.5457 | 97.9487 | 99.1499 | 50.4465 | 3056 | 64 | 2916 | 25 | 8 | 32.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0716 | 98.5896 | 99.5583 | 44.7023 | 3635 | 52 | 3606 | 16 | 8 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | HG002compoundhet | hetalt | 90.2840 | 82.6087 | 99.5316 | 37.2520 | 1729 | 364 | 1700 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9728 | 84.5626 | 98.4344 | 65.7965 | 493 | 90 | 503 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 90.2206 | 83.1563 | 98.5965 | 64.1509 | 548 | 111 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.9321 | 78.6885 | 85.4545 | 77.6423 | 48 | 13 | 47 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 90.2206 | 83.1563 | 98.5965 | 64.1509 | 548 | 111 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | homalt | 99.5439 | 99.1894 | 99.9010 | 45.4107 | 13338 | 109 | 13119 | 13 | 8 | 61.5385 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 96.1107 | 93.3110 | 99.0836 | 51.0924 | 837 | 60 | 865 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.5049 | 92.7033 | 98.4810 | 62.0192 | 775 | 61 | 778 | 12 | 8 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.3459 | 97.0855 | 99.6394 | 45.0946 | 2465 | 74 | 2487 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5935 | 97.6182 | 99.5885 | 50.6933 | 2910 | 71 | 2904 | 12 | 8 | 66.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.2763 | 96.9365 | 99.6537 | 46.3792 | 2563 | 81 | 2590 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.9665 | 97.1234 | 98.8245 | 57.1668 | 1283 | 38 | 1261 | 15 | 8 | 53.3333 | |
| ltrigg-rtg2 | SNP | * | map_l100_m1_e0 | het | 98.8659 | 98.0136 | 99.7330 | 50.5607 | 44458 | 901 | 44456 | 119 | 8 | 6.7227 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e0 | het | 98.8752 | 98.0452 | 99.7194 | 53.1503 | 45492 | 907 | 45491 | 128 | 8 | 6.2500 | |
| ltrigg-rtg2 | SNP | * | map_l100_m2_e1 | het | 98.8788 | 98.0660 | 99.7052 | 53.2399 | 45991 | 907 | 45990 | 136 | 8 | 5.8824 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 58.1718 | 93.5484 | 42.2096 | 64.5582 | 58 | 4 | 149 | 204 | 8 | 3.9216 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 65.2356 | 95.9184 | 49.4253 | 67.9558 | 47 | 2 | 86 | 88 | 8 | 9.0909 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.8882 | 100.0000 | 90.2736 | 37.3333 | 59 | 0 | 297 | 32 | 8 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | map_siren | * | 71.0638 | 81.6393 | 62.9139 | 77.5520 | 249 | 56 | 285 | 168 | 8 | 4.7619 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7774 | 99.7208 | 99.8342 | 53.5684 | 6071 | 17 | 6021 | 10 | 8 | 80.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 80.8643 | 90.1961 | 73.2824 | 95.0076 | 92 | 10 | 96 | 35 | 8 | 22.8571 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.4970 | 99.5995 | 99.3948 | 81.7770 | 1492 | 6 | 1478 | 9 | 8 | 88.8889 | |
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | het | 97.6425 | 97.1812 | 98.1081 | 82.4811 | 2172 | 63 | 2178 | 42 | 8 | 19.0476 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | het | 97.6490 | 97.1391 | 98.1643 | 83.4371 | 2241 | 66 | 2246 | 42 | 8 | 19.0476 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e1 | het | 97.6853 | 97.1831 | 98.1928 | 83.5574 | 2277 | 66 | 2282 | 42 | 8 | 19.0476 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.1764 | 97.4871 | 98.8756 | 71.7313 | 1319 | 34 | 1319 | 15 | 8 | 53.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 91.5094 | 95.0980 | 88.1818 | 60.7143 | 97 | 5 | 97 | 13 | 8 | 61.5385 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | het | 88.4651 | 96.1538 | 81.9149 | 90.0529 | 75 | 3 | 77 | 17 | 8 | 47.0588 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 73.2832 | 58.3269 | 98.5549 | 37.2051 | 753 | 538 | 682 | 10 | 8 | 80.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.4104 | 94.8905 | 97.9798 | 71.8750 | 390 | 21 | 388 | 8 | 8 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.5245 | 69.8462 | 97.8923 | 31.4607 | 454 | 196 | 418 | 9 | 8 | 88.8889 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | * | 97.8802 | 97.6103 | 98.1516 | 85.0201 | 1062 | 26 | 1062 | 20 | 8 | 40.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | * | 97.9825 | 97.7253 | 98.2410 | 85.7697 | 1117 | 26 | 1117 | 20 | 8 | 40.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | * | 98.0069 | 97.7528 | 98.2624 | 85.8582 | 1131 | 26 | 1131 | 20 | 8 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.4803 | 98.6631 | 96.3255 | 58.8553 | 369 | 5 | 367 | 14 | 8 | 57.1429 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | het | 93.2926 | 97.6190 | 89.3333 | 87.2557 | 123 | 3 | 134 | 16 | 8 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | het | 93.1342 | 96.9466 | 89.6104 | 87.6997 | 127 | 4 | 138 | 16 | 8 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 77.7778 | 95.4545 | 65.6250 | 81.0651 | 21 | 1 | 21 | 11 | 8 | 72.7273 | |
| ltrigg-rtg2 | SNP | ti | HG002compoundhet | het | 99.3400 | 99.0005 | 99.6817 | 37.0509 | 9410 | 95 | 9396 | 30 | 8 | 26.6667 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 87.1287 | 93.6170 | 81.4815 | 63.5135 | 44 | 3 | 44 | 10 | 8 | 80.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.1803 | 85.0575 | 89.4118 | 82.8629 | 74 | 13 | 76 | 9 | 8 | 88.8889 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | het | 65.3674 | 67.3913 | 63.4615 | 92.2619 | 31 | 15 | 33 | 19 | 8 | 42.1053 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | het | 63.1579 | 66.6667 | 60.0000 | 93.0991 | 32 | 16 | 33 | 22 | 8 | 36.3636 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 51.7241 | 93.7500 | 35.7143 | 94.3396 | 15 | 1 | 15 | 27 | 8 | 29.6296 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | * | 67.3310 | 58.9041 | 78.5714 | 86.1728 | 43 | 30 | 44 | 12 | 8 | 66.6667 | |