PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65451-65500 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7395 | 97.7629 | 99.7358 | 42.4788 | 2622 | 60 | 2643 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7677 | 99.8606 | 99.6750 | 47.8198 | 2149 | 3 | 2147 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l125_m1_e0 | het | 95.7558 | 96.3296 | 95.1887 | 89.3639 | 1286 | 49 | 1286 | 65 | 7 | 10.7692 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | het | 95.7173 | 96.4055 | 95.0390 | 90.2021 | 1341 | 50 | 1341 | 70 | 7 | 10.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0531 | 89.5265 | 99.0617 | 37.9884 | 624 | 73 | 739 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3295 | 95.4449 | 99.2901 | 33.1072 | 901 | 43 | 979 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | * | segdup | homalt | 99.5843 | 99.8958 | 99.2746 | 93.0445 | 959 | 1 | 958 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | HG002compoundhet | * | 95.6183 | 100.0000 | 91.6045 | 83.2080 | 1 | 0 | 491 | 45 | 7 | 15.5556 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 65.8537 | 94.7301 | 0 | 0 | 27 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 56.2500 | 94.7798 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 66.6667 | 95.1445 | 0 | 0 | 28 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 56.2500 | 95.3148 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 66.6667 | 95.2435 | 0 | 0 | 28 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 56.2500 | 95.4155 | 0 | 0 | 18 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.7635 | 97.0721 | 98.4649 | 72.6946 | 431 | 13 | 449 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 84.8574 | 86.9565 | 82.8571 | 91.8320 | 40 | 6 | 58 | 12 | 7 | 58.3333 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 83.6445 | 85.4167 | 81.9444 | 92.5620 | 41 | 7 | 59 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.6663 | 86.2745 | 83.1169 | 92.2457 | 44 | 7 | 64 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.7502 | 94.8052 | 98.7768 | 42.3619 | 365 | 20 | 969 | 12 | 7 | 58.3333 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m1_e0 | het | 96.0240 | 97.6013 | 94.4969 | 82.5992 | 1180 | 29 | 1202 | 70 | 7 | 10.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 96.0894 | 97.5318 | 94.6889 | 83.3900 | 1225 | 31 | 1248 | 70 | 7 | 10.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1254 | 97.5552 | 94.7368 | 83.5172 | 1237 | 31 | 1260 | 70 | 7 | 10.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4606 | 99.4792 | 95.5224 | 40.8824 | 191 | 1 | 192 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 93.6988 | 94.4444 | 92.9648 | 84.0673 | 119 | 7 | 185 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 93.8735 | 94.6565 | 93.1034 | 84.7712 | 124 | 7 | 189 | 14 | 7 | 50.0000 | |
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | het | 97.6379 | 96.5414 | 98.7595 | 67.9804 | 642 | 23 | 1035 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7108 | 93.6893 | 95.7547 | 87.1903 | 193 | 13 | 203 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.2112 | 100.0000 | 94.5736 | 84.5324 | 122 | 0 | 122 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.1463 | 87.3563 | 91.0112 | 82.7519 | 76 | 11 | 81 | 8 | 7 | 87.5000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.1852 | 100.0000 | 74.1935 | 85.9091 | 23 | 0 | 23 | 8 | 7 | 87.5000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.8462 | 100.0000 | 88.4058 | 88.5000 | 61 | 0 | 61 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 27.3810 | 96.7391 | 0 | 1 | 23 | 61 | 7 | 11.4754 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 25.3333 | 95.0166 | 0 | 0 | 19 | 56 | 7 | 12.5000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 13.0435 | 94.6009 | 0 | 0 | 3 | 20 | 7 | 35.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 9.5238 | 93.2692 | 0 | 0 | 2 | 19 | 7 | 36.8421 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | homalt | 69.1824 | 91.6667 | 55.5556 | 94.1935 | 11 | 1 | 10 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 69.0619 | 63.3663 | 75.8824 | 95.3892 | 128 | 74 | 129 | 41 | 7 | 17.0732 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | homalt | 62.0690 | 75.0000 | 52.9412 | 92.5764 | 9 | 3 | 9 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 23.5294 | 100.0000 | 13.3333 | 89.6552 | 1 | 0 | 2 | 13 | 7 | 53.8462 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | het | 50.0000 | 75.0000 | 37.5000 | 55.5556 | 6 | 2 | 6 | 10 | 7 | 70.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 35.8337 | 23.4568 | 75.8621 | 81.8750 | 19 | 62 | 22 | 7 | 7 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 53.1073 | 38.5246 | 85.4545 | 67.2619 | 47 | 75 | 47 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 85.7143 | 0 | 0 | 0 | 9 | 7 | 77.7778 | ||
| ckim-dragen | SNP | tv | map_l125_m0_e0 | homalt | 99.4590 | 99.3246 | 99.5937 | 66.7118 | 2206 | 15 | 2206 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | homalt | 99.1254 | 99.2991 | 98.9523 | 83.2944 | 850 | 6 | 850 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | tv | map_l250_m2_e0 | homalt | 99.1471 | 99.2529 | 99.0415 | 84.5432 | 930 | 7 | 930 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | tv | map_l250_m2_e1 | homalt | 99.1552 | 99.2600 | 99.0506 | 84.6353 | 939 | 7 | 939 | 9 | 7 | 77.7778 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8445 | 97.7707 | 97.9183 | 79.2041 | 1228 | 28 | 1223 | 26 | 7 | 26.9231 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6131 | 99.4059 | 99.8211 | 49.8317 | 6693 | 40 | 6695 | 12 | 7 | 58.3333 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | het | 95.3358 | 98.5019 | 92.3669 | 91.9308 | 1315 | 20 | 1319 | 109 | 7 | 6.4220 | |