PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64901-64950 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 52.4550 | 86.9565 | 37.5546 | 88.1756 | 240 | 36 | 258 | 429 | 7 | 1.6317 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 63.4050 | 90.1585 | 48.8958 | 86.0954 | 1365 | 149 | 1417 | 1481 | 7 | 0.4727 | |
| ghariani-varprowl | SNP | ti | func_cds | homalt | 99.8769 | 99.9431 | 99.8107 | 21.2934 | 5272 | 3 | 5272 | 10 | 7 | 70.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 60.1889 | 88.8889 | 45.4986 | 84.0583 | 640 | 80 | 657 | 787 | 7 | 0.8895 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.6740 | 88.1188 | 64.7887 | 95.5942 | 89 | 12 | 92 | 50 | 7 | 14.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.5502 | 99.5139 | 91.8902 | 78.2560 | 1433 | 7 | 1439 | 127 | 7 | 5.5118 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7696 | 99.5895 | 99.9503 | 57.3476 | 28144 | 116 | 28146 | 14 | 7 | 50.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | hetalt | 85.7143 | 93.1034 | 79.4118 | 79.6407 | 27 | 2 | 27 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | hetalt | 86.1538 | 93.3333 | 80.0000 | 81.7708 | 28 | 2 | 28 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | hetalt | 86.5672 | 93.5484 | 80.5556 | 81.3472 | 29 | 2 | 29 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_siren | hetalt | 89.5492 | 91.2281 | 87.9310 | 76.7068 | 52 | 5 | 51 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 30.6069 | 35.1515 | 27.1028 | 96.8469 | 58 | 107 | 58 | 156 | 7 | 4.4872 | |
| gduggal-snapplat | SNP | tv | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7220 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l125_m2_e1 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7769 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | tv | segdup | homalt | 99.3958 | 99.0735 | 99.7201 | 90.1395 | 3208 | 30 | 3207 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 25.0000 | 84.7619 | 0 | 0 | 12 | 36 | 7 | 19.4444 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 23.9130 | 83.8596 | 0 | 0 | 11 | 35 | 7 | 20.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 15.2381 | 9.1954 | 44.4444 | 84.6154 | 8 | 79 | 8 | 10 | 7 | 70.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 17.6471 | 11.5385 | 37.5000 | 85.1852 | 6 | 46 | 6 | 10 | 7 | 70.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.1717 | 93.7669 | 94.5799 | 81.8940 | 346 | 23 | 349 | 20 | 7 | 35.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 70.2703 | 100.0000 | 54.1667 | 50.0000 | 13 | 0 | 13 | 11 | 7 | 63.6364 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | het | 95.6711 | 96.4433 | 94.9111 | 81.1539 | 1166 | 43 | 1175 | 63 | 7 | 11.1111 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | * | 95.1860 | 95.5645 | 94.8104 | 87.9856 | 474 | 22 | 475 | 26 | 7 | 26.9231 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 57.1429 | 46.5116 | 74.0741 | 65.8228 | 20 | 23 | 20 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 75.3108 | 61.8076 | 96.3636 | 56.5217 | 212 | 131 | 212 | 8 | 7 | 87.5000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 38.8186 | 25.0000 | 86.7925 | 22.0588 | 6 | 18 | 46 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.6603 | 88.6076 | 97.1014 | 74.9319 | 280 | 36 | 268 | 8 | 7 | 87.5000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | * | 96.2822 | 96.8675 | 95.7041 | 87.0978 | 804 | 26 | 802 | 36 | 7 | 19.4444 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e0 | * | 96.3387 | 96.8495 | 95.8333 | 88.2337 | 830 | 27 | 828 | 36 | 7 | 19.4444 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m2_e1 | * | 96.3932 | 96.8966 | 95.8951 | 88.3455 | 843 | 27 | 841 | 36 | 7 | 19.4444 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m1_e0 | * | 95.2705 | 95.6522 | 94.8919 | 90.2115 | 484 | 22 | 483 | 26 | 7 | 26.9231 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e0 | * | 95.3887 | 95.7611 | 95.0192 | 91.2077 | 497 | 22 | 496 | 26 | 7 | 26.9231 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4029 | 95.8569 | 94.9533 | 91.2223 | 509 | 22 | 508 | 27 | 7 | 25.9259 | |
| gduggal-snapfb | INDEL | I1_5 | segdup | homalt | 97.4757 | 98.0973 | 96.8619 | 93.7995 | 464 | 9 | 463 | 15 | 7 | 46.6667 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 43.4297 | 28.6501 | 89.7059 | 44.7154 | 104 | 259 | 61 | 7 | 7 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 21.4286 | 16.6667 | 30.0000 | 64.2857 | 4 | 20 | 3 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | hetalt | 34.1880 | 23.8095 | 60.6061 | 98.0287 | 20 | 64 | 20 | 13 | 7 | 53.8462 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | homalt | 88.9159 | 82.0205 | 97.0771 | 85.2746 | 958 | 210 | 1096 | 33 | 7 | 21.2121 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 38.1468 | 23.7733 | 96.4789 | 45.0677 | 281 | 901 | 274 | 10 | 7 | 70.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 43.3030 | 29.1607 | 84.0796 | 50.0000 | 205 | 498 | 169 | 32 | 7 | 21.8750 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 57.8898 | 44.1696 | 83.9744 | 90.0574 | 125 | 158 | 131 | 25 | 7 | 28.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 62.5395 | 49.1632 | 85.9155 | 86.2802 | 235 | 243 | 244 | 40 | 7 | 17.5000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.5093 | 87.1670 | 98.5493 | 64.5442 | 1963 | 289 | 1970 | 29 | 7 | 24.1379 | |
| gduggal-snapplat | SNP | * | map_l125_m1_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 84.4660 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7220 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | hetalt | 80.6452 | 83.3333 | 78.1250 | 86.7769 | 25 | 5 | 25 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.3092 | 94.0011 | 98.7334 | 63.5924 | 1661 | 106 | 1637 | 21 | 7 | 33.3333 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2056 | 96.5856 | 93.8645 | 49.5961 | 2065 | 73 | 2050 | 134 | 7 | 5.2239 | |
| gduggal-snapvard | SNP | tv | map_l150_m2_e0 | homalt | 97.7892 | 95.8854 | 99.7701 | 73.2819 | 3915 | 168 | 3906 | 9 | 7 | 77.7778 | |