PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64701-64750 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 96.1525 | 97.2426 | 95.0864 | 84.7784 | 1058 | 30 | 1045 | 54 | 6 | 11.1111 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e0 | * | 96.1629 | 97.2003 | 95.1473 | 85.5786 | 1111 | 32 | 1098 | 56 | 6 | 10.7143 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 96.2092 | 97.2342 | 95.2055 | 85.6546 | 1125 | 32 | 1112 | 56 | 6 | 10.7143 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 95.7666 | 96.8545 | 94.7028 | 87.9645 | 739 | 24 | 733 | 41 | 6 | 14.6341 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e1 | * | 95.7815 | 96.7866 | 94.7970 | 87.9805 | 753 | 25 | 747 | 41 | 6 | 14.6341 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4104 | 99.5294 | 99.2916 | 44.4954 | 846 | 4 | 841 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.6365 | 93.2331 | 98.1670 | 73.3875 | 124 | 9 | 482 | 9 | 6 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.2858 | 94.6860 | 97.9405 | 73.0746 | 392 | 22 | 428 | 9 | 6 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1807 | 95.9350 | 98.4592 | 79.2386 | 236 | 10 | 639 | 10 | 6 | 60.0000 | |
| ciseli-custom | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 17.3913 | 96.3978 | 0 | 0 | 8 | 38 | 6 | 15.7895 | |
| ciseli-custom | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 16.2791 | 95.0575 | 0 | 0 | 7 | 36 | 6 | 16.6667 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 62.5799 | 57.6577 | 68.4211 | 97.6398 | 64 | 47 | 65 | 30 | 6 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 76.6355 | 71.9298 | 82.0000 | 95.5791 | 41 | 16 | 41 | 9 | 6 | 66.6667 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 64.0842 | 58.6777 | 70.5882 | 97.7293 | 71 | 50 | 72 | 30 | 6 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 63.2360 | 58.1967 | 69.2308 | 97.7322 | 71 | 51 | 72 | 32 | 6 | 18.7500 | |
| ciseli-custom | INDEL | I1_5 | func_cds | homalt | 91.8455 | 89.9160 | 93.8596 | 19.1489 | 107 | 12 | 107 | 7 | 6 | 85.7143 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 44.9704 | 31.1475 | 80.8511 | 62.9921 | 38 | 84 | 38 | 9 | 6 | 66.6667 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 16.6796 | 78.5714 | 9.3301 | 83.9601 | 33 | 9 | 39 | 379 | 6 | 1.5831 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 21.1754 | 68.1818 | 12.5341 | 86.6642 | 45 | 21 | 46 | 321 | 6 | 1.8692 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | het | 64.5750 | 60.5996 | 69.1087 | 96.2053 | 566 | 368 | 566 | 253 | 6 | 2.3715 | |
| ciseli-custom | SNP | ti | map_siren | hetalt | 81.1321 | 75.4386 | 87.7551 | 63.1579 | 43 | 14 | 43 | 6 | 6 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6964 | 99.7792 | 99.6138 | 75.7541 | 3615 | 8 | 3611 | 14 | 6 | 42.8571 | |
| ckim-dragen | INDEL | * | map_l100_m0_e0 | homalt | 97.6490 | 98.0354 | 97.2656 | 84.3281 | 499 | 10 | 498 | 14 | 6 | 42.8571 | |
| ckim-dragen | INDEL | * | map_l125_m1_e0 | homalt | 98.4239 | 98.2240 | 98.6245 | 85.5150 | 719 | 13 | 717 | 10 | 6 | 60.0000 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | homalt | 98.4233 | 98.2962 | 98.5507 | 86.5115 | 750 | 13 | 748 | 11 | 6 | 54.5455 | |
| ckim-dragen | INDEL | * | map_l125_m2_e1 | homalt | 98.4458 | 98.3204 | 98.5714 | 86.6180 | 761 | 13 | 759 | 11 | 6 | 54.5455 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | het | 95.1102 | 95.7792 | 94.4504 | 92.0262 | 885 | 39 | 885 | 52 | 6 | 11.5385 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | * | 93.3423 | 94.4262 | 92.2830 | 95.9948 | 288 | 17 | 287 | 24 | 6 | 25.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e0 | * | 93.8607 | 94.8640 | 92.8783 | 96.2572 | 314 | 17 | 313 | 24 | 6 | 25.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | * | 93.8972 | 94.8949 | 92.9204 | 96.3411 | 316 | 17 | 315 | 24 | 6 | 25.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6628 | 98.4043 | 98.9228 | 61.2656 | 555 | 9 | 551 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1748 | 98.8355 | 99.5163 | 68.9098 | 1358 | 16 | 1646 | 8 | 6 | 75.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 96.8476 | 96.5060 | 97.1917 | 84.9670 | 801 | 29 | 796 | 23 | 6 | 26.0870 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 96.8251 | 96.3827 | 97.2716 | 86.3349 | 826 | 31 | 820 | 23 | 6 | 26.0870 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 96.8730 | 96.4368 | 97.3131 | 86.4514 | 839 | 31 | 833 | 23 | 6 | 26.0870 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.2727 | 100.0000 | 77.4194 | 74.5902 | 24 | 0 | 24 | 7 | 6 | 85.7143 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8364 | 99.7525 | 99.9204 | 39.9139 | 10077 | 25 | 10036 | 8 | 6 | 75.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4328 | 99.7924 | 99.0758 | 46.4998 | 6730 | 14 | 6754 | 63 | 6 | 9.5238 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8854 | 99.8625 | 99.9082 | 58.4392 | 10896 | 15 | 10886 | 10 | 6 | 60.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8504 | 99.8290 | 99.8718 | 59.4899 | 7007 | 12 | 7011 | 9 | 6 | 66.6667 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 26.6667 | 96.0212 | 0 | 0 | 4 | 11 | 6 | 54.5455 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 28.5714 | 95.2862 | 0 | 0 | 4 | 10 | 6 | 60.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.6256 | 97.1429 | 98.1132 | 79.1104 | 374 | 11 | 364 | 7 | 6 | 85.7143 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.9823 | 98.9848 | 97.0000 | 60.1594 | 195 | 2 | 194 | 6 | 6 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m1_e0 | * | 97.5455 | 97.9437 | 97.1505 | 85.1212 | 1810 | 38 | 1807 | 53 | 6 | 11.3208 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e0 | * | 97.6319 | 98.0157 | 97.2510 | 85.8443 | 1877 | 38 | 1875 | 53 | 6 | 11.3208 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m2_e1 | * | 97.6611 | 98.0402 | 97.2848 | 85.9143 | 1901 | 38 | 1899 | 53 | 6 | 11.3208 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7110 | 86.7096 | 99.6050 | 29.5781 | 1481 | 227 | 1513 | 6 | 6 | 100.0000 | |