PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64551-64600 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | segdup | * | 91.4691 | 86.9110 | 96.5318 | 93.2842 | 166 | 25 | 167 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | segdup | het | 94.7244 | 95.6522 | 93.8144 | 94.1033 | 88 | 4 | 91 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | * | 99.0333 | 98.8686 | 99.1987 | 80.5885 | 2971 | 34 | 2971 | 24 | 6 | 25.0000 | |
| egarrison-hhga | INDEL | I1_5 | segdup | * | 98.8191 | 98.7724 | 98.8658 | 94.3109 | 1046 | 13 | 1046 | 12 | 6 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.5478 | 83.8926 | 93.7500 | 74.1935 | 125 | 24 | 120 | 8 | 6 | 75.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 91.7694 | 88.7681 | 94.9807 | 88.6104 | 245 | 31 | 246 | 13 | 6 | 46.1538 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | homalt | 99.7164 | 99.5232 | 99.9103 | 68.4370 | 6680 | 32 | 6680 | 6 | 6 | 100.0000 | |
| egarrison-hhga | SNP | * | map_l250_m0_e0 | * | 98.0810 | 96.9555 | 99.2330 | 92.5099 | 2070 | 65 | 2070 | 16 | 6 | 37.5000 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.3636 | 98.0237 | 98.7058 | 69.2437 | 1984 | 40 | 1983 | 26 | 6 | 23.0769 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6106 | 99.4231 | 99.7987 | 35.5602 | 3964 | 23 | 3966 | 8 | 6 | 75.0000 | |
| egarrison-hhga | SNP | ti | map_l150_m0_e0 | het | 98.7730 | 97.9203 | 99.6406 | 81.1953 | 4991 | 106 | 4991 | 18 | 6 | 33.3333 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e0 | het | 98.4630 | 97.4493 | 99.4980 | 89.1481 | 3171 | 83 | 3171 | 16 | 6 | 37.5000 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | het | 98.4531 | 97.4235 | 99.5046 | 89.2351 | 3214 | 85 | 3214 | 16 | 6 | 37.5000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.7911 | 98.1976 | 99.3919 | 80.6257 | 1471 | 27 | 1471 | 9 | 6 | 66.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2342 | 98.9813 | 99.4883 | 56.1128 | 1749 | 18 | 1750 | 9 | 6 | 66.6667 | |
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | * | 98.9629 | 98.2990 | 99.6357 | 78.3979 | 4103 | 71 | 4103 | 15 | 6 | 40.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | homalt | 97.3105 | 98.1651 | 96.4706 | 95.2843 | 107 | 2 | 164 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 89.0625 | 0 | 0 | 0 | 7 | 6 | 85.7143 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 38.4615 | 92.2156 | 0 | 0 | 5 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 40.0000 | 92.4242 | 0 | 0 | 6 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 39.2857 | 92.8021 | 0 | 0 | 11 | 17 | 6 | 35.2941 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | het | 96.2431 | 94.4896 | 98.0630 | 66.6532 | 1046 | 61 | 810 | 16 | 6 | 37.5000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5155 | 98.1707 | 94.9153 | 85.9857 | 161 | 3 | 112 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2604 | 90.1484 | 98.7654 | 72.0930 | 668 | 73 | 640 | 8 | 6 | 75.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.7720 | 96.1851 | 99.4123 | 57.0191 | 1185 | 47 | 1184 | 7 | 6 | 85.7143 | |
| hfeng-pmm1 | INDEL | I16_PLUS | * | hetalt | 96.1260 | 92.8027 | 99.6962 | 58.0768 | 1947 | 151 | 1969 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.9244 | 92.1529 | 97.8678 | 75.1983 | 458 | 39 | 459 | 10 | 6 | 60.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.8285 | 93.5953 | 98.1707 | 81.2678 | 643 | 44 | 644 | 12 | 6 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.7719 | 98.5989 | 98.9455 | 64.4153 | 563 | 8 | 563 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9312 | 99.9214 | 99.9410 | 54.0442 | 10170 | 8 | 10170 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | * | 99.1528 | 99.3483 | 98.9580 | 80.2591 | 3506 | 23 | 3514 | 37 | 6 | 16.2162 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8226 | 97.8845 | 99.7788 | 48.7459 | 3609 | 78 | 3609 | 8 | 6 | 75.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | hetalt | 95.9205 | 92.4214 | 99.6950 | 58.3968 | 1939 | 159 | 1961 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7636 | 100.0000 | 95.6250 | 77.4648 | 153 | 0 | 153 | 7 | 6 | 85.7143 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8615 | 99.7820 | 99.9410 | 72.3104 | 16938 | 37 | 16938 | 10 | 6 | 60.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8615 | 99.7820 | 99.9410 | 72.3104 | 16938 | 37 | 16938 | 10 | 6 | 60.0000 | |
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | homalt | 99.4730 | 99.6346 | 99.3120 | 87.0152 | 2454 | 9 | 2454 | 17 | 6 | 35.2941 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e0 | homalt | 99.4980 | 99.6277 | 99.3687 | 87.8966 | 2676 | 10 | 2676 | 17 | 6 | 35.2941 | |
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | homalt | 99.5040 | 99.6321 | 99.3761 | 87.9531 | 2708 | 10 | 2708 | 17 | 6 | 35.2941 | |
| hfeng-pmm2 | SNP | ti | HG002compoundhet | homalt | 99.9324 | 99.9459 | 99.9189 | 30.7750 | 7390 | 4 | 7390 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | map_l125_m0_e0 | homalt | 99.6883 | 99.7105 | 99.6661 | 69.9826 | 4478 | 13 | 4478 | 15 | 6 | 40.0000 | |
| hfeng-pmm2 | SNP | tv | map_l150_m0_e0 | * | 98.6509 | 98.9938 | 98.3103 | 81.9664 | 4132 | 42 | 4131 | 71 | 6 | 8.4507 | |
| hfeng-pmm2 | SNP | tv | map_l250_m1_e0 | * | 98.2628 | 98.3000 | 98.2257 | 89.1399 | 2602 | 45 | 2602 | 47 | 6 | 12.7660 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7059 | 93.6606 | 99.9559 | 40.2439 | 15646 | 1059 | 15869 | 7 | 6 | 85.7143 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7059 | 93.6606 | 99.9559 | 40.2439 | 15646 | 1059 | 15869 | 7 | 6 | 85.7143 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0338 | 98.2985 | 99.7802 | 60.1845 | 10919 | 189 | 10893 | 24 | 6 | 25.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4784 | 99.1386 | 99.8206 | 46.1563 | 6675 | 58 | 6677 | 12 | 6 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m0_e0 | * | 98.2754 | 98.3365 | 98.2143 | 84.4120 | 1537 | 26 | 1540 | 28 | 6 | 21.4286 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | * | 98.6235 | 98.5287 | 98.7186 | 85.1274 | 2076 | 31 | 2080 | 27 | 6 | 22.2222 | |
| hfeng-pmm3 | INDEL | * | map_l125_m2_e0 | * | 98.5876 | 98.4517 | 98.7238 | 86.1051 | 2162 | 34 | 2166 | 28 | 6 | 21.4286 | |