PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
64501-64550 / 86044 show all
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
83.6943
72.8549
98.3229
36.6534
46717446986
75.0000
ckim-isaacSNP*map_l100_m0_e0het
77.3393
63.1643
99.7172
71.7888
13394781113397386
15.7895
ckim-isaacSNP*map_l125_m2_e1homalt
67.3574
50.7985
99.9327
65.6358
89068626890666
100.0000
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1838
92.7372
95.6762
65.3122
18771471903866
6.9767
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.1004
91.1765
99.3772
49.3237
1116108111776
85.7143
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.6063
94.2548
99.0780
47.3389
27891702794266
23.0769
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.0776
92.7182
99.6894
66.0081
2241176224776
85.7143
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50het
97.5990
96.0558
99.1926
35.3810
64782666511536
11.3208
ckim-isaacSNPtimap_l100_m0_e0*
75.5708
60.8148
99.7815
66.9687
13240853113241296
20.6897
ckim-isaacSNPtimap_sirenhet
88.1134
78.8433
99.8538
52.2793
491841319849191726
8.3333
ckim-isaacSNPtimap_sirenhomalt
82.7288
70.5560
99.9776
44.7961
26752111642675366
100.0000
ckim-isaacSNPtvmap_l150_m1_e0het
71.1670
55.3988
99.4831
79.3620
384830983849206
30.0000
ckim-isaacSNPtvmap_l150_m2_e0het
71.5812
55.9018
99.4848
80.5969
405431984055216
28.5714
ckim-isaacSNPtvmap_l150_m2_e1het
71.6314
55.9608
99.4920
80.5897
411232364113216
28.5714
ckim-vqsrINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.1896
94.7427
99.7662
39.0209
2541141256066
100.0000
ckim-vqsrINDEL*map_l150_m1_e0*
96.2213
96.0389
96.4045
93.0291
1285531287486
12.5000
ckim-vqsrINDEL*map_l150_m2_e0*
96.2276
95.9517
96.5050
93.5044
1351571353496
12.2449
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.9371
98.3926
99.4876
28.3354
116319116566
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
97.6390
96.2169
99.1037
24.2483
7633077476
85.7143
dgrover-gatkINDELI16_PLUSHG002complexvarhomalt
99.0385
100.0000
98.0952
70.7521
309030966
100.0000
dgrover-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50homalt
93.1818
100.0000
87.2340
88.3663
4104166
100.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.8889
100.0000
80.0000
79.1667
2402466
100.0000
dgrover-gatkSNP*map_l150_m0_e0homalt
99.3242
98.8506
99.8025
74.1808
404247404286
75.0000
dgrover-gatkSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.9859
98.8636
99.1085
68.8570
2001232001186
33.3333
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.3818
99.2284
99.5356
87.4927
128610128666
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.4131
99.5300
99.2966
88.5687
847484766
100.0000
dgrover-gatkSNPtimap_l100_m0_e0homalt
99.5677
99.2411
99.8964
59.9180
771559771586
75.0000
dgrover-gatkSNPtimap_l150_m1_e0homalt
99.5618
99.2357
99.8901
68.6615
727156727186
75.0000
dgrover-gatkSNPtimap_l150_m2_e0homalt
99.5587
99.2253
99.8942
70.9853
755759755786
75.0000
dgrover-gatkSNPtimap_l150_m2_e1homalt
99.5631
99.2331
99.8953
71.0135
763459763486
75.0000
dgrover-gatkSNPtimap_l250_m0_e0*
97.9517
97.7372
98.1672
93.8664
1339311339256
24.0000
dgrover-gatkSNPtisegdup*
99.6780
99.8413
99.5153
89.9275
195063119504956
6.3158
dgrover-gatkSNPtvsegdup*
99.6606
99.8359
99.4859
91.6354
8518148514446
13.6364
dgrover-gatkSNPtvsegduphomalt
99.8765
99.9382
99.8149
89.5365
32362323666
100.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
63.6157
46.9649
98.5586
37.4295
58866454786
75.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
80.8511
90.4762
73.0769
99.9443
1921976
85.7143
egarrison-hhgaINDEL*map_l150_m1_e0het
97.3128
97.1930
97.4329
89.1766
83124835226
27.2727
egarrison-hhgaINDEL*map_l150_m2_e0het
97.4639
97.3510
97.5771
89.7297
88224886226
27.2727
egarrison-hhgaINDEL*map_l150_m2_e1het
97.5133
97.4026
97.6242
89.7600
90024904226
27.2727
egarrison-hhgaINDELD16_PLUS*hetalt
60.0179
43.0419
99.1060
48.8235
832110177676
85.7143
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
59.9599
42.9829
99.1026
48.8525
830110177376
85.7143
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
58.3543
41.3584
99.0640
45.3538
68296763566
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
59.9599
42.9829
99.1026
48.8525
830110177376
85.7143
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
92.8218
95.0820
90.6667
66.3677
5836876
85.7143
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
74.6988
67.3913
83.7838
60.6383
31153166
100.0000
egarrison-hhgaINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
56.6038
75.0000
45.4545
78.4314
62566
100.0000
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
98.1870
98.6301
97.7477
76.6562
6489651156
40.0000
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
81.3778
69.3846
98.3834
31.9182
45119942676
85.7143
egarrison-hhgaINDELD1_5map_l125_m2_e1*
98.3578
98.3578
98.3578
86.6797
1138191138196
31.5789
egarrison-hhgaINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
65.1258
48.6464
98.4906
44.0338
57560752286
75.0000