PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64351-64400 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 90.0901 | 89.2857 | 90.9091 | 84.7575 | 100 | 12 | 60 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | * | 98.1968 | 97.6393 | 98.7607 | 94.3611 | 1034 | 25 | 1036 | 13 | 6 | 46.1538 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.0465 | 90.2439 | 82.2222 | 92.8458 | 37 | 4 | 37 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | * | map_l125_m0_e0 | homalt | 99.3333 | 98.7783 | 99.8945 | 72.5403 | 6630 | 82 | 6630 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.5468 | 94.7781 | 98.3827 | 85.6535 | 363 | 20 | 365 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.4865 | 91.4286 | 82.0513 | 92.3228 | 32 | 3 | 32 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1968 | 99.5561 | 98.8400 | 40.7302 | 2467 | 11 | 2471 | 29 | 6 | 20.6897 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | homalt | 99.4445 | 99.0224 | 99.8703 | 64.5919 | 7698 | 76 | 7698 | 10 | 6 | 60.0000 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | homalt | 99.3830 | 98.9218 | 99.8485 | 72.6540 | 7248 | 79 | 7248 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e0 | homalt | 99.3999 | 98.9496 | 99.8542 | 74.6089 | 7536 | 80 | 7536 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e1 | homalt | 99.3993 | 98.9471 | 99.8557 | 74.6736 | 7612 | 81 | 7612 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | segdup | het | 98.5285 | 99.3516 | 97.7189 | 92.3400 | 11952 | 78 | 11952 | 279 | 6 | 2.1505 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8593 | 98.3311 | 99.3931 | 83.7319 | 1473 | 25 | 1474 | 9 | 6 | 66.6667 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6908 | 99.5369 | 99.8452 | 60.6918 | 3869 | 18 | 3869 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | homalt | 99.4861 | 99.1126 | 99.8624 | 68.8267 | 5808 | 52 | 5808 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | homalt | 99.4828 | 99.1025 | 99.8660 | 70.9836 | 5963 | 54 | 5963 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | homalt | 99.4877 | 99.1110 | 99.8673 | 71.0512 | 6020 | 54 | 6020 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l250_m0_e0 | * | 96.6469 | 96.0784 | 97.2222 | 93.6095 | 735 | 30 | 735 | 21 | 6 | 28.5714 | |
| gduggal-bwafb | SNP | tv | segdup | het | 98.1577 | 99.2623 | 97.0773 | 93.8623 | 5248 | 39 | 5248 | 158 | 6 | 3.7975 | |
| gduggal-bwaplat | INDEL | * | segdup | het | 93.7455 | 88.9495 | 99.0881 | 97.0073 | 1304 | 162 | 1304 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002compoundhet | homalt | 52.6316 | 62.5000 | 45.4545 | 79.2453 | 5 | 3 | 5 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | * | 82.4716 | 70.7792 | 98.7915 | 91.7846 | 1308 | 540 | 1308 | 16 | 6 | 37.5000 | |
| eyeh-varpipe | INDEL | I6_15 | segdup | het | 92.1647 | 91.5663 | 92.7711 | 88.6612 | 76 | 7 | 77 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.0198 | 99.8511 | 88.8320 | 71.0242 | 2682 | 4 | 2601 | 327 | 6 | 1.8349 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6942 | 99.6620 | 93.8981 | 67.0587 | 2949 | 10 | 2893 | 188 | 6 | 3.1915 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.8428 | 99.7468 | 94.1030 | 63.9275 | 1576 | 4 | 1516 | 95 | 6 | 6.3158 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0758 | 99.7696 | 98.3916 | 38.1103 | 3897 | 9 | 3854 | 63 | 6 | 9.5238 | |
| eyeh-varpipe | SNP | ti | map_l125_m1_e0 | homalt | 99.8628 | 99.8280 | 99.8977 | 68.2342 | 11026 | 19 | 10743 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | homalt | 99.8667 | 99.8327 | 99.9006 | 70.5235 | 11339 | 19 | 11058 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | homalt | 99.8678 | 99.8342 | 99.9015 | 70.5782 | 11439 | 19 | 11154 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | SNP | ti | map_l250_m1_e0 | * | 98.9581 | 99.3885 | 98.5313 | 90.1600 | 4551 | 28 | 4495 | 67 | 6 | 8.9552 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e0 | * | 99.0376 | 99.4409 | 98.6375 | 90.5192 | 4980 | 28 | 4923 | 68 | 6 | 8.8235 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | * | 99.0209 | 99.4484 | 98.5971 | 90.5779 | 5048 | 28 | 4990 | 71 | 6 | 8.4507 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.2187 | 99.8597 | 96.6309 | 38.9931 | 2135 | 3 | 1979 | 69 | 6 | 8.6957 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | * | 98.7000 | 99.5089 | 97.9042 | 90.2532 | 2634 | 13 | 2616 | 56 | 6 | 10.7143 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | * | 98.7380 | 99.5489 | 97.9403 | 90.6578 | 2869 | 13 | 2853 | 60 | 6 | 10.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | * | 98.7186 | 99.5542 | 97.8969 | 90.7430 | 2903 | 13 | 2886 | 62 | 6 | 9.6774 | |
| eyeh-varpipe | SNP | tv | segdup | homalt | 99.8439 | 99.8765 | 99.8114 | 90.5570 | 3234 | 4 | 3176 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m0_e0 | homalt | 98.5280 | 98.6248 | 98.4314 | 85.7978 | 502 | 7 | 502 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | homalt | 98.7688 | 98.6339 | 98.9041 | 86.6472 | 722 | 10 | 722 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | homalt | 98.8189 | 98.6894 | 98.9488 | 87.4319 | 753 | 10 | 753 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | homalt | 98.6425 | 98.5788 | 98.7063 | 87.5222 | 763 | 11 | 763 | 10 | 6 | 60.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m1_e0 | homalt | 98.1582 | 98.0519 | 98.2646 | 89.3558 | 453 | 9 | 453 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | homalt | 98.1250 | 97.9210 | 98.3299 | 90.1643 | 471 | 10 | 471 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | homalt | 98.0671 | 97.9675 | 98.1670 | 90.1524 | 482 | 10 | 482 | 9 | 6 | 66.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 56.0345 | 40.3727 | 91.5493 | 70.2929 | 65 | 96 | 65 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 73.1343 | 58.3082 | 98.0711 | 75.8578 | 965 | 690 | 966 | 19 | 6 | 31.5789 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002compoundhet | het | 45.1327 | 36.1702 | 60.0000 | 92.0635 | 17 | 30 | 18 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.1082 | 50.8361 | 98.7013 | 60.3433 | 456 | 441 | 456 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.8824 | 65.8473 | 95.3008 | 85.1934 | 509 | 264 | 507 | 25 | 6 | 24.0000 | |