PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64301-64350 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2885 | 99.3428 | 99.2341 | 89.3299 | 907 | 6 | 907 | 7 | 6 | 85.7143 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4462 | 99.3676 | 99.5249 | 88.0409 | 1257 | 8 | 1257 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.2817 | 99.2817 | 99.2817 | 83.4450 | 2626 | 19 | 2626 | 19 | 6 | 31.5789 | |
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | homalt | 99.7786 | 99.6572 | 99.9002 | 59.2105 | 9012 | 31 | 9012 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | homalt | 99.7827 | 99.6636 | 99.9021 | 61.6697 | 9183 | 31 | 9183 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e1 | homalt | 99.7847 | 99.6667 | 99.9030 | 61.6624 | 9271 | 31 | 9271 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | homalt | 99.7095 | 99.5734 | 99.8460 | 64.1604 | 5835 | 25 | 5835 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e0 | homalt | 99.7171 | 99.5845 | 99.8500 | 66.6926 | 5992 | 25 | 5992 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l125_m2_e1 | homalt | 99.7197 | 99.5884 | 99.8514 | 66.7125 | 6049 | 25 | 6049 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | segdup | * | 99.4858 | 99.8125 | 99.1612 | 91.3387 | 8516 | 16 | 8512 | 72 | 6 | 8.3333 | |
| bgallagher-sentieon | SNP | tv | segdup | homalt | 99.8611 | 99.9074 | 99.8149 | 89.4615 | 3235 | 3 | 3235 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.1348 | 100.0000 | 85.4167 | 94.0959 | 1 | 0 | 41 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 9.6515 | 5.2632 | 58.0645 | 68.3673 | 19 | 342 | 18 | 13 | 6 | 46.1538 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.2642 | 60.0000 | 64.7059 | 96.4876 | 9 | 6 | 11 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_siren | homalt | 57.1429 | 52.9412 | 62.0690 | 85.5721 | 18 | 16 | 18 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7842 | 98.0306 | 99.5494 | 36.1496 | 2240 | 45 | 2430 | 11 | 6 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.3470 | 97.9730 | 96.7290 | 90.0047 | 145 | 3 | 207 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | het | 98.1609 | 98.4416 | 97.8818 | 85.3694 | 758 | 12 | 878 | 19 | 6 | 31.5789 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 59.5745 | 66.6667 | 53.8462 | 93.8095 | 4 | 2 | 7 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 47.6190 | 50.0000 | 45.4545 | 94.3878 | 2 | 2 | 5 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 53.3333 | 50.0000 | 57.1429 | 99.4104 | 3 | 3 | 12 | 9 | 6 | 66.6667 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | het | 91.4037 | 93.3333 | 89.5522 | 86.6534 | 56 | 4 | 60 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | * | 87.7092 | 85.1064 | 90.4762 | 90.8828 | 40 | 7 | 57 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | het | 90.4649 | 88.0435 | 93.0233 | 92.0149 | 81 | 11 | 80 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | het | 43.6447 | 30.6122 | 76.0000 | 62.1212 | 15 | 34 | 19 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 62.5000 | 47.6190 | 90.9091 | 74.4186 | 40 | 44 | 60 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 33.4975 | 22.2222 | 68.0000 | 60.3175 | 6 | 21 | 17 | 8 | 6 | 75.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 69.6394 | 53.9936 | 98.0519 | 57.5172 | 169 | 144 | 302 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | * | 97.8783 | 97.4194 | 98.3416 | 86.6297 | 302 | 8 | 593 | 10 | 6 | 60.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 58.9695 | 42.1941 | 97.8873 | 36.0360 | 100 | 137 | 278 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.2290 | 62.1302 | 98.6047 | 43.8642 | 105 | 64 | 424 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.6416 | 80.8917 | 95.6204 | 51.7606 | 127 | 30 | 131 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | * | 67.1429 | 54.0230 | 88.6792 | 85.5978 | 47 | 40 | 47 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | * | 66.6667 | 53.3333 | 88.8889 | 86.2595 | 48 | 42 | 48 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | * | 66.2338 | 52.5773 | 89.4737 | 85.6784 | 51 | 46 | 51 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | het | 83.1234 | 76.9231 | 90.4110 | 81.1370 | 60 | 18 | 66 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7176 | 98.5348 | 98.9011 | 76.6167 | 538 | 8 | 540 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | * | 97.6299 | 97.0238 | 98.2437 | 83.5797 | 1793 | 55 | 1790 | 32 | 6 | 18.7500 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | * | 97.6865 | 97.0757 | 98.3051 | 84.3163 | 1859 | 56 | 1856 | 32 | 6 | 18.7500 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.0465 | 86.0465 | 86.0465 | 75.1445 | 37 | 6 | 37 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 87.4562 | 79.3003 | 97.4820 | 62.2795 | 272 | 71 | 271 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8166 | 94.3609 | 97.3180 | 80.3612 | 251 | 15 | 254 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.2317 | 63.6364 | 98.2143 | 47.5546 | 210 | 120 | 495 | 9 | 6 | 66.6667 | |
| gduggal-bwafb | INDEL | D6_15 | segdup | homalt | 94.3396 | 100.0000 | 89.2857 | 93.3492 | 50 | 0 | 50 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | hetalt | 57.7977 | 43.2836 | 86.9565 | 69.5364 | 145 | 190 | 40 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 16.6887 | 9.4737 | 70.0000 | 64.9123 | 9 | 86 | 14 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 24.6154 | 14.8148 | 72.7273 | 60.7143 | 16 | 92 | 16 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 22.6415 | 13.6364 | 66.6667 | 53.8462 | 9 | 57 | 12 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.4651 | 56.5217 | 65.0000 | 70.1493 | 13 | 10 | 13 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 50.5495 | 37.7049 | 76.6667 | 71.4286 | 23 | 38 | 23 | 7 | 6 | 85.7143 | |