PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64251-64300 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.7942 | 85.6604 | 98.8743 | 47.1754 | 454 | 76 | 527 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2719 | 98.8007 | 99.7476 | 56.4979 | 16971 | 206 | 16992 | 43 | 6 | 13.9535 | |
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | * | 45.8193 | 29.7342 | 99.8160 | 91.0946 | 9765 | 23076 | 9765 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | * | map_l100_m0_e0 | het | 48.7115 | 32.2235 | 99.7518 | 92.2778 | 6833 | 14372 | 6833 | 17 | 6 | 35.2941 | |
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | * | 46.3852 | 30.2138 | 99.8032 | 91.3119 | 13695 | 31632 | 13692 | 27 | 6 | 22.2222 | |
| asubramanian-gatk | SNP | * | map_l125_m1_e0 | het | 49.6482 | 33.0516 | 99.7236 | 92.3828 | 9384 | 19008 | 9381 | 26 | 6 | 23.0769 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | * | 40.2806 | 25.2386 | 99.7022 | 94.5086 | 8039 | 23813 | 8036 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e0 | het | 43.4711 | 27.8051 | 99.5729 | 95.1282 | 5598 | 14535 | 5595 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | * | 40.4494 | 25.3710 | 99.7071 | 94.4964 | 8172 | 24038 | 8169 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | * | map_l150_m2_e1 | het | 43.6280 | 27.9330 | 99.5796 | 95.1225 | 5688 | 14675 | 5685 | 24 | 6 | 25.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7149 | 98.1219 | 99.3151 | 65.8879 | 3187 | 61 | 3190 | 22 | 6 | 27.2727 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9777 | 98.0072 | 97.9483 | 86.5329 | 1082 | 22 | 1098 | 23 | 6 | 26.0870 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3470 | 98.3333 | 98.3607 | 87.6954 | 708 | 12 | 720 | 12 | 6 | 50.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | * | 48.4647 | 32.0015 | 99.8144 | 91.1697 | 9683 | 20575 | 9681 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | het | 51.5556 | 34.7637 | 99.7264 | 92.2284 | 6562 | 12314 | 6560 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | * | 48.6953 | 32.2026 | 99.8174 | 91.1355 | 9844 | 20725 | 9842 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | het | 51.8016 | 34.9872 | 99.7311 | 92.1950 | 6678 | 12409 | 6676 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | tv | segdup | * | 97.9981 | 96.6831 | 99.3493 | 93.1884 | 8249 | 283 | 8245 | 54 | 6 | 11.1111 | |
| asubramanian-gatk | SNP | tv | segdup | homalt | 98.1636 | 96.5720 | 99.8085 | 89.8001 | 3127 | 111 | 3127 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7380 | 99.8068 | 99.6692 | 75.6445 | 3616 | 7 | 3616 | 12 | 6 | 50.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7006 | 97.6510 | 99.7730 | 41.9121 | 2619 | 63 | 2637 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8608 | 100.0000 | 99.7220 | 47.5832 | 2152 | 0 | 2152 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.9717 | 94.1441 | 95.8140 | 64.6962 | 209 | 13 | 206 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | map_l100_m1_e0 | homalt | 99.1870 | 99.4295 | 98.9457 | 83.6667 | 1220 | 7 | 1220 | 13 | 6 | 46.1538 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e0 | homalt | 99.1696 | 99.4449 | 98.8959 | 84.6359 | 1254 | 7 | 1254 | 14 | 6 | 42.8571 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | homalt | 99.1826 | 99.4536 | 98.9130 | 84.6885 | 1274 | 7 | 1274 | 14 | 6 | 42.8571 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | * | 97.5866 | 98.4127 | 96.7742 | 90.0652 | 868 | 14 | 870 | 29 | 6 | 20.6897 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.7562 | 99.4987 | 98.0247 | 65.4142 | 397 | 2 | 397 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.9022 | 98.6444 | 99.1614 | 72.2190 | 946 | 13 | 946 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m1_e0 | * | 98.7880 | 99.1342 | 98.4442 | 84.0520 | 1832 | 16 | 1835 | 29 | 6 | 20.6897 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | * | 98.8043 | 99.1123 | 98.4982 | 84.6307 | 1898 | 17 | 1902 | 29 | 6 | 20.6897 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | * | 98.8190 | 99.1233 | 98.5166 | 84.7206 | 1922 | 17 | 1926 | 29 | 6 | 20.6897 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | * | 99.2660 | 99.4899 | 99.0431 | 81.6382 | 3511 | 18 | 3519 | 34 | 6 | 17.6471 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.8510 | 98.2234 | 99.4867 | 27.7056 | 1161 | 21 | 1163 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1124 | 95.2081 | 99.0944 | 24.4379 | 755 | 38 | 766 | 7 | 6 | 85.7143 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.0751 | 96.5596 | 97.5962 | 85.4240 | 421 | 15 | 406 | 10 | 6 | 60.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.4615 | 100.0000 | 79.3103 | 89.2593 | 23 | 0 | 23 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.5736 | 100.0000 | 89.7059 | 91.5633 | 61 | 0 | 61 | 7 | 6 | 85.7143 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2716 | 99.5000 | 97.0732 | 61.0266 | 199 | 1 | 199 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3181 | 99.2492 | 99.3870 | 72.2871 | 1322 | 10 | 1297 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | HG002complexvar | het | 99.2727 | 98.8535 | 99.6955 | 59.4318 | 2328 | 27 | 2292 | 7 | 6 | 85.7143 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9298 | 97.5741 | 98.2882 | 73.1623 | 724 | 18 | 689 | 12 | 6 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.1065 | 97.5584 | 98.6607 | 74.2677 | 919 | 23 | 884 | 12 | 6 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7043 | 98.0318 | 99.3860 | 61.8783 | 1295 | 26 | 1295 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | HG002compoundhet | het | 99.8158 | 99.7685 | 99.8631 | 39.5979 | 9483 | 22 | 9481 | 13 | 6 | 46.1538 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.3822 | 99.3056 | 99.4590 | 87.2487 | 1287 | 9 | 1287 | 7 | 6 | 85.7143 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5944 | 99.5794 | 99.6093 | 76.9540 | 6629 | 28 | 6629 | 26 | 6 | 23.0769 | |
| bgallagher-sentieon | SNP | ti | map_l125_m0_e0 | homalt | 99.5535 | 99.2875 | 99.8209 | 66.4916 | 4459 | 32 | 4459 | 8 | 6 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | segdup | * | 99.5103 | 99.8567 | 99.1663 | 89.5899 | 19509 | 28 | 19507 | 164 | 6 | 3.6585 | |
| bgallagher-sentieon | SNP | tv | HG002compoundhet | homalt | 99.8524 | 99.9115 | 99.7933 | 42.7775 | 3385 | 3 | 3380 | 7 | 6 | 85.7143 | |