PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63751-63800 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | ti | map_l250_m1_e0 | * | 99.0936 | 99.0828 | 99.1044 | 88.3618 | 4537 | 42 | 4537 | 41 | 5 | 12.1951 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e0 | * | 99.1712 | 99.1613 | 99.1811 | 88.8122 | 4966 | 42 | 4966 | 41 | 5 | 12.1951 | |
| hfeng-pmm3 | SNP | ti | map_l250_m2_e1 | * | 99.1724 | 99.1529 | 99.1920 | 88.8826 | 5033 | 43 | 5033 | 41 | 5 | 12.1951 | |
| hfeng-pmm3 | SNP | tv | HG002compoundhet | homalt | 99.8376 | 99.8229 | 99.8524 | 42.5250 | 3382 | 6 | 3382 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5901 | 97.6240 | 99.5756 | 74.7725 | 8916 | 217 | 8916 | 38 | 5 | 13.1579 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5901 | 97.6240 | 99.5756 | 74.7725 | 8916 | 217 | 8916 | 38 | 5 | 13.1579 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6772 | 97.5494 | 99.8314 | 64.0612 | 4737 | 119 | 4737 | 8 | 5 | 62.5000 | |
| hfeng-pmm3 | SNP | tv | map_l100_m1_e0 | het | 99.5262 | 99.4681 | 99.5843 | 65.6944 | 15335 | 82 | 15331 | 64 | 5 | 7.8125 | |
| hfeng-pmm3 | SNP | tv | map_l100_m1_e0 | homalt | 99.8285 | 99.8010 | 99.8562 | 62.3809 | 9025 | 18 | 9025 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | het | 99.5338 | 99.4803 | 99.5875 | 67.0941 | 15695 | 82 | 15691 | 65 | 5 | 7.6923 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e0 | homalt | 99.8317 | 99.8046 | 99.8588 | 64.7570 | 9196 | 18 | 9196 | 13 | 5 | 38.4615 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e1 | het | 99.5354 | 99.4855 | 99.5854 | 67.1367 | 15856 | 82 | 15852 | 66 | 5 | 7.5758 | |
| hfeng-pmm3 | SNP | tv | map_l100_m2_e1 | homalt | 99.8333 | 99.8065 | 99.8602 | 64.7574 | 9284 | 18 | 9284 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | homalt | 99.0385 | 100.0000 | 98.0952 | 70.1139 | 309 | 0 | 309 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.2529 | 100.0000 | 89.1304 | 87.5000 | 41 | 0 | 41 | 5 | 5 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2583 | 98.7709 | 99.7505 | 77.4015 | 6027 | 75 | 5998 | 15 | 5 | 33.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3658 | 97.2888 | 99.4670 | 68.3001 | 933 | 26 | 933 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7394 | 96.4567 | 99.0566 | 64.0330 | 735 | 27 | 735 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | * | 98.5318 | 97.9978 | 99.0715 | 81.6035 | 1811 | 37 | 1814 | 17 | 5 | 29.4118 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5570 | 98.0157 | 99.1043 | 82.2749 | 1877 | 38 | 1881 | 17 | 5 | 29.4118 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | * | 98.5749 | 98.0402 | 99.1155 | 82.3896 | 1901 | 38 | 1905 | 17 | 5 | 29.4118 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | * | 99.1622 | 98.8665 | 99.4596 | 79.2799 | 3489 | 40 | 3497 | 19 | 5 | 26.3158 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0678 | 96.6163 | 99.5636 | 56.9165 | 1599 | 56 | 1597 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4015 | 97.3724 | 99.4527 | 70.1934 | 1297 | 35 | 1272 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.2865 | 96.1857 | 98.4127 | 70.2674 | 580 | 23 | 558 | 9 | 5 | 55.5556 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 81.2500 | 73.2394 | 91.2281 | 63.4615 | 52 | 19 | 52 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8547 | 94.6154 | 99.2026 | 23.5366 | 615 | 35 | 622 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7177 | 99.6321 | 99.8035 | 42.5670 | 4062 | 15 | 4064 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.0000 | 92.3077 | 63.1579 | 85.2713 | 12 | 1 | 12 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3266 | 99.6622 | 98.9933 | 82.4396 | 590 | 2 | 590 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3475 | 99.6727 | 99.0244 | 83.2288 | 609 | 2 | 609 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3569 | 99.6774 | 99.0385 | 83.3511 | 618 | 2 | 618 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.0014 | 99.4269 | 98.5795 | 85.3088 | 347 | 2 | 347 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0424 | 99.4505 | 98.6376 | 86.1143 | 362 | 2 | 362 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0629 | 99.4624 | 98.6667 | 86.1470 | 370 | 2 | 370 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.8000 | 99.5968 | 98.0159 | 88.3710 | 247 | 1 | 247 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.5907 | 97.6311 | 99.5693 | 27.5733 | 1154 | 28 | 1156 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 84.0000 | 87.5000 | 80.7692 | 72.3404 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_siren | het | 96.0854 | 96.4286 | 95.7447 | 85.9911 | 270 | 10 | 270 | 12 | 5 | 41.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | segdup | * | 96.2963 | 95.2880 | 97.3262 | 92.9726 | 182 | 9 | 182 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | segdup | het | 95.6989 | 96.7391 | 94.6809 | 94.0881 | 89 | 3 | 89 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3717 | 99.3717 | 99.3717 | 79.9201 | 949 | 6 | 949 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.3260 | 97.7233 | 98.9362 | 63.8924 | 558 | 13 | 558 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.1200 | 97.1631 | 99.0958 | 72.4464 | 548 | 16 | 548 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8202 | 98.3099 | 99.3359 | 67.6190 | 1047 | 18 | 1047 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.9511 | 85.8736 | 96.6667 | 77.4436 | 231 | 38 | 232 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.2852 | 97.4779 | 99.1060 | 84.2645 | 773 | 20 | 776 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | het | 98.1972 | 97.4074 | 99.0000 | 84.3750 | 789 | 21 | 792 | 8 | 5 | 62.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | segdup | het | 98.7928 | 98.6989 | 98.8868 | 94.8759 | 531 | 7 | 533 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | homalt | 98.6717 | 97.8583 | 99.4987 | 53.9792 | 1188 | 26 | 1191 | 6 | 5 | 83.3333 | |