PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63601-63650 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.4156 | 0 | 1 | 0 | 16 | 5 | 31.2500 | ||
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 90.9276 | 91.7603 | 90.1099 | 64.2202 | 245 | 22 | 246 | 27 | 5 | 18.5185 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | * | 93.7753 | 95.1613 | 92.4290 | 89.6642 | 295 | 15 | 293 | 24 | 5 | 20.8333 | |
| gduggal-snapfb | INDEL | I6_15 | func_cds | het | 77.0270 | 75.0000 | 79.1667 | 35.1351 | 18 | 6 | 19 | 5 | 5 | 100.0000 | |
| hfeng-pmm2 | SNP | * | map_l250_m0_e0 | homalt | 98.8924 | 99.3641 | 98.4252 | 92.6877 | 625 | 4 | 625 | 10 | 5 | 50.0000 | |
| hfeng-pmm2 | SNP | ti | map_l150_m0_e0 | homalt | 99.6019 | 99.6740 | 99.5298 | 75.8368 | 2752 | 9 | 2752 | 13 | 5 | 38.4615 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | * | 98.1118 | 98.6131 | 97.6156 | 93.5472 | 1351 | 19 | 1351 | 33 | 5 | 15.1515 | |
| hfeng-pmm2 | SNP | tv | HG002compoundhet | homalt | 99.7933 | 99.7639 | 99.8228 | 43.5008 | 3380 | 8 | 3380 | 6 | 5 | 83.3333 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5395 | 97.2611 | 99.8520 | 63.6434 | 4723 | 133 | 4723 | 7 | 5 | 71.4286 | |
| hfeng-pmm2 | SNP | tv | map_l100_m1_e0 | homalt | 99.8507 | 99.8562 | 99.8452 | 62.5538 | 9030 | 13 | 9030 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e0 | homalt | 99.8535 | 99.8589 | 99.8481 | 64.9206 | 9201 | 13 | 9201 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l100_m2_e1 | homalt | 99.8549 | 99.8602 | 99.8495 | 64.9261 | 9289 | 13 | 9289 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7782 | 99.7952 | 99.7612 | 67.4839 | 5848 | 12 | 5848 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e0 | homalt | 99.7840 | 99.8006 | 99.7674 | 69.8673 | 6005 | 12 | 6005 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7860 | 99.8024 | 99.7696 | 69.9104 | 6062 | 12 | 6062 | 14 | 5 | 35.7143 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.1114 | 98.9086 | 99.3151 | 72.3170 | 725 | 8 | 725 | 5 | 5 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.4704 | 93.2214 | 99.9539 | 31.0883 | 12831 | 933 | 13019 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4523 | 93.1870 | 99.9548 | 33.8499 | 13076 | 956 | 13269 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8832 | 98.9837 | 98.7830 | 57.7187 | 487 | 5 | 487 | 6 | 5 | 83.3333 | |
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | het | 98.5219 | 98.2998 | 98.7450 | 82.8675 | 2197 | 38 | 2203 | 28 | 5 | 17.8571 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | het | 98.4803 | 98.2228 | 98.7391 | 83.7628 | 2266 | 41 | 2271 | 29 | 5 | 17.2414 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | het | 98.5037 | 98.2501 | 98.7586 | 83.8596 | 2302 | 41 | 2307 | 29 | 5 | 17.2414 | |
| hfeng-pmm3 | INDEL | * | map_l125_m0_e0 | * | 98.0793 | 98.2993 | 97.8604 | 87.9462 | 867 | 15 | 869 | 19 | 5 | 26.3158 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.1804 | 89.8785 | 98.9147 | 72.1262 | 666 | 75 | 638 | 7 | 5 | 71.4286 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.2745 | 91.6667 | 81.4815 | 78.2258 | 22 | 2 | 22 | 5 | 5 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.0769 | 100.0000 | 96.2264 | 77.0893 | 153 | 0 | 153 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1579 | 98.4076 | 99.9197 | 59.2367 | 34855 | 564 | 34845 | 28 | 5 | 17.8571 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7336 | 97.7570 | 99.7300 | 68.1488 | 28068 | 644 | 28068 | 76 | 5 | 6.5790 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8880 | 99.8233 | 99.9528 | 71.8323 | 16945 | 30 | 16945 | 8 | 5 | 62.5000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7336 | 97.7570 | 99.7300 | 68.1488 | 28068 | 644 | 28068 | 76 | 5 | 6.5790 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8880 | 99.8233 | 99.9528 | 71.8323 | 16945 | 30 | 16945 | 8 | 5 | 62.5000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7476 | 95.6863 | 99.8995 | 66.9763 | 5967 | 269 | 5967 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | SNP | * | map_l250_m0_e0 | homalt | 98.8924 | 99.3641 | 98.4252 | 92.6624 | 625 | 4 | 625 | 10 | 5 | 50.0000 | |
| hfeng-pmm1 | SNP | ti | map_l125_m0_e0 | homalt | 99.6547 | 99.6215 | 99.6881 | 70.0040 | 4474 | 17 | 4474 | 14 | 5 | 35.7143 | |
| hfeng-pmm1 | SNP | ti | map_l250_m0_e0 | * | 98.2865 | 98.3942 | 98.1792 | 92.9532 | 1348 | 22 | 1348 | 25 | 5 | 20.0000 | |
| hfeng-pmm1 | SNP | ti | segdup | * | 99.7442 | 99.8004 | 99.6881 | 88.7407 | 19498 | 39 | 19496 | 61 | 5 | 8.1967 | |
| hfeng-pmm1 | SNP | ti | segdup | homalt | 99.9467 | 99.9600 | 99.9334 | 88.2045 | 7502 | 3 | 7502 | 5 | 5 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | HG002compoundhet | homalt | 99.8229 | 99.7934 | 99.8523 | 42.7460 | 3381 | 7 | 3381 | 5 | 5 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.1947 | 98.5087 | 99.8903 | 63.5767 | 17306 | 262 | 17297 | 19 | 5 | 26.3158 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5604 | 97.4488 | 99.6975 | 72.9214 | 8900 | 233 | 8900 | 27 | 5 | 18.5185 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5604 | 97.4488 | 99.6975 | 72.9214 | 8900 | 233 | 8900 | 27 | 5 | 18.5185 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9888 | 96.2435 | 99.7985 | 65.0879 | 2972 | 116 | 2972 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | SNP | tv | map_l100_m1_e0 | homalt | 99.8507 | 99.8452 | 99.8562 | 62.4720 | 9029 | 14 | 9029 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e0 | homalt | 99.8535 | 99.8481 | 99.8589 | 64.8359 | 9200 | 14 | 9200 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | SNP | tv | map_l100_m2_e1 | homalt | 99.8549 | 99.8495 | 99.8602 | 64.8422 | 9288 | 14 | 9288 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | homalt | 99.7867 | 99.7952 | 99.7782 | 67.3918 | 5848 | 12 | 5848 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | homalt | 99.7923 | 99.8006 | 99.7840 | 69.7785 | 6005 | 12 | 6005 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | homalt | 99.7942 | 99.8024 | 99.7860 | 69.8227 | 6062 | 12 | 6062 | 13 | 5 | 38.4615 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4783 | 99.1237 | 99.8355 | 46.7341 | 6674 | 59 | 6676 | 11 | 5 | 45.4545 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.7052 | 92.7928 | 96.6981 | 61.0294 | 206 | 16 | 205 | 7 | 5 | 71.4286 | |