PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63451-63500 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 76.4641 | 66.6667 | 89.6373 | 96.7233 | 2 | 1 | 346 | 40 | 5 | 12.5000 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 57.1429 | 94.9091 | 0 | 0 | 16 | 12 | 5 | 41.6667 | |
| cchapple-custom | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 45.4545 | 94.8598 | 0 | 0 | 10 | 12 | 5 | 41.6667 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 60.0000 | 95.8746 | 0 | 0 | 15 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 47.3684 | 96.0251 | 0 | 0 | 9 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 96.2687 | 0 | 0 | 15 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 47.3684 | 96.3947 | 0 | 0 | 9 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 61.5385 | 96.2099 | 0 | 0 | 16 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 50.0000 | 96.2963 | 0 | 0 | 10 | 10 | 5 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 88.1356 | 86.5143 | 0 | 0 | 104 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 88.0342 | 86.0382 | 0 | 0 | 103 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 84.2697 | 96.2668 | 0 | 0 | 75 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 78.4615 | 96.6234 | 0 | 0 | 51 | 14 | 5 | 35.7143 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.7421 | 98.7469 | 98.7374 | 50.0631 | 394 | 5 | 391 | 5 | 5 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1538 | 98.0392 | 94.3396 | 51.5982 | 100 | 2 | 100 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3136 | 99.0921 | 99.5361 | 73.0198 | 1528 | 14 | 1502 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7813 | 99.6999 | 99.8628 | 43.7307 | 3655 | 11 | 3639 | 5 | 5 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 96.2312 | 96.7555 | 95.7126 | 83.6954 | 835 | 28 | 826 | 37 | 5 | 13.5135 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 95.8402 | 96.9317 | 94.7730 | 87.3013 | 695 | 22 | 689 | 38 | 5 | 13.1579 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2009 | 99.0050 | 99.3976 | 60.0802 | 995 | 10 | 990 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5000 | 95.8716 | 99.1848 | 78.2549 | 418 | 18 | 1095 | 9 | 5 | 55.5556 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3377 | 96.0417 | 98.6692 | 81.4984 | 461 | 19 | 519 | 7 | 5 | 71.4286 | |
| gduggal-snapplat | SNP | ti | func_cds | * | 99.5243 | 99.4052 | 99.6437 | 28.8978 | 13705 | 82 | 13705 | 49 | 5 | 10.2041 | |
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.4542 | 90.5866 | 98.6667 | 57.1156 | 1328 | 138 | 1332 | 18 | 5 | 27.7778 | |
| gduggal-snapplat | SNP | ti | map_l150_m0_e0 | homalt | 90.3251 | 82.5063 | 99.7809 | 77.2958 | 2278 | 483 | 2277 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.3269 | 91.2425 | 80.1316 | 82.4013 | 1219 | 117 | 1218 | 302 | 5 | 1.6556 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.3984 | 90.7602 | 72.1601 | 85.1616 | 776 | 79 | 775 | 299 | 5 | 1.6722 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 26.6667 | 33.8710 | 21.9895 | 96.6397 | 42 | 82 | 42 | 149 | 5 | 3.3557 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0119 | 68.8026 | 95.5844 | 61.7961 | 1471 | 667 | 1472 | 68 | 5 | 7.3529 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_siren | homalt | 96.8214 | 93.9095 | 99.9197 | 58.2133 | 16190 | 1050 | 16181 | 13 | 5 | 38.4615 | |
| gduggal-snapvard | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 23.5294 | 84.9558 | 0 | 0 | 16 | 52 | 5 | 9.6154 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 37.2093 | 71.1409 | 0 | 0 | 16 | 27 | 5 | 18.5185 | |
| gduggal-snapvard | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 57.8947 | 87.4172 | 0 | 0 | 11 | 8 | 5 | 62.5000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 70.8333 | 94.2446 | 0 | 0 | 34 | 14 | 5 | 35.7143 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 43.8095 | 95.8167 | 0 | 0 | 46 | 59 | 5 | 8.4746 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 36.5591 | 95.7515 | 0 | 0 | 34 | 59 | 5 | 8.4746 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 86.3158 | 83.6735 | 89.1304 | 77.9904 | 41 | 8 | 41 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.1415 | 83.9662 | 92.7536 | 39.4737 | 199 | 38 | 64 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | homalt | 95.3393 | 92.6868 | 98.1481 | 96.7438 | 583 | 46 | 583 | 11 | 5 | 45.4545 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 49.0421 | 92.7536 | 33.3333 | 92.3171 | 64 | 5 | 63 | 126 | 5 | 3.9683 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2893 | 99.6556 | 98.9258 | 48.4715 | 4051 | 14 | 4052 | 44 | 5 | 11.3636 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e0 | homalt | 95.4735 | 91.6524 | 99.6271 | 92.3917 | 1603 | 146 | 1603 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | homalt | 95.4425 | 91.5914 | 99.6317 | 92.4268 | 1623 | 149 | 1623 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 71.0348 | 99.0643 | 55.3687 | 72.8200 | 847 | 8 | 856 | 690 | 5 | 0.7246 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 66.3492 | 99.1247 | 49.8623 | 65.6965 | 906 | 8 | 905 | 910 | 5 | 0.5495 | |
| gduggal-snapfb | SNP | tv | map_l150_m0_e0 | homalt | 95.3524 | 92.6958 | 98.1659 | 89.1785 | 1231 | 97 | 1231 | 23 | 5 | 21.7391 | |
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | homalt | 95.8509 | 93.1075 | 98.7608 | 93.4160 | 797 | 59 | 797 | 10 | 5 | 50.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | homalt | 95.9430 | 93.3831 | 98.6471 | 93.4664 | 875 | 62 | 875 | 12 | 5 | 41.6667 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | homalt | 95.8740 | 93.3404 | 98.5491 | 93.5115 | 883 | 63 | 883 | 13 | 5 | 38.4615 | |