PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63101-63150 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | homalt | 99.8284 | 99.7235 | 99.9335 | 62.1365 | 9018 | 25 | 9018 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | homalt | 99.8316 | 99.7287 | 99.9347 | 64.6441 | 9189 | 25 | 9189 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | homalt | 99.8332 | 99.7312 | 99.9354 | 64.6456 | 9277 | 25 | 9277 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | map_l125_m1_e0 | homalt | 99.7864 | 99.6587 | 99.9145 | 66.8895 | 5840 | 20 | 5840 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e0 | homalt | 99.7920 | 99.6676 | 99.9167 | 69.5036 | 5997 | 20 | 5997 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m2_e1 | homalt | 99.7940 | 99.6707 | 99.9175 | 69.5482 | 6054 | 20 | 6054 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | het | 98.6520 | 97.8192 | 99.4991 | 79.4500 | 2781 | 62 | 2781 | 14 | 5 | 35.7143 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | het | 98.0159 | 96.7543 | 99.3107 | 87.0375 | 1729 | 58 | 1729 | 12 | 5 | 41.6667 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | het | 98.0955 | 96.9072 | 99.3133 | 87.4569 | 1880 | 60 | 1880 | 13 | 5 | 38.4615 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | het | 98.1200 | 96.9466 | 99.3222 | 87.5276 | 1905 | 60 | 1905 | 13 | 5 | 38.4615 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 37.5000 | 92.3077 | 99.6143 | 6 | 10 | 60 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l100_m1_e0 | hetalt | 47.0062 | 31.4516 | 93.0000 | 92.1198 | 39 | 85 | 93 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | hetalt | 47.6427 | 32.0000 | 93.2039 | 92.5254 | 40 | 85 | 96 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e1 | hetalt | 46.6253 | 31.0606 | 93.4579 | 92.4542 | 41 | 91 | 100 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e0 | het | 96.4428 | 96.6667 | 96.2199 | 94.7821 | 203 | 7 | 280 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | het | 96.4506 | 96.6825 | 96.2199 | 94.9010 | 204 | 7 | 280 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 40.0000 | 90.1961 | 0 | 0 | 4 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 40.0000 | 93.4211 | 0 | 0 | 4 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 21.4286 | 90.0000 | 0 | 0 | 6 | 22 | 5 | 22.7273 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 94.8980 | 93.3514 | 0 | 0 | 93 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.4615 | 100.0000 | 96.9697 | 47.4801 | 192 | 0 | 192 | 6 | 5 | 83.3333 | |
| dgrover-gatk | INDEL | I16_PLUS | * | hetalt | 96.2521 | 92.9933 | 99.7475 | 58.1926 | 1951 | 147 | 1975 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 89.7959 | 100.0000 | 81.4815 | 87.8378 | 22 | 0 | 22 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7564 | 96.8254 | 98.7055 | 66.0626 | 610 | 20 | 610 | 8 | 5 | 62.5000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5149 | 99.5000 | 97.5490 | 61.2167 | 199 | 1 | 199 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3559 | 99.2492 | 99.4628 | 72.8768 | 1322 | 10 | 1296 | 7 | 5 | 71.4286 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5587 | 100.0000 | 99.1213 | 72.9177 | 564 | 0 | 564 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | * | 99.2843 | 99.1348 | 99.4343 | 81.3909 | 2979 | 26 | 2988 | 17 | 5 | 29.4118 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.0674 | 97.7089 | 98.4286 | 73.8024 | 725 | 17 | 689 | 11 | 5 | 45.4545 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.2146 | 97.6645 | 98.7709 | 74.8454 | 920 | 22 | 884 | 11 | 5 | 45.4545 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7964 | 99.6289 | 99.9645 | 66.6982 | 16912 | 63 | 16912 | 6 | 5 | 83.3333 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7964 | 99.6289 | 99.9645 | 66.6982 | 16912 | 63 | 16912 | 6 | 5 | 83.3333 | |
| dgrover-gatk | SNP | * | map_l250_m1_e0 | homalt | 98.9982 | 98.2948 | 99.7117 | 85.6084 | 2421 | 42 | 2421 | 7 | 5 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l250_m2_e0 | homalt | 99.0440 | 98.3619 | 99.7357 | 86.6145 | 2642 | 44 | 2642 | 7 | 5 | 71.4286 | |
| dgrover-gatk | SNP | * | map_l250_m2_e1 | homalt | 99.0554 | 98.3812 | 99.7389 | 86.6637 | 2674 | 44 | 2674 | 7 | 5 | 71.4286 | |
| dgrover-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.6673 | 99.8600 | 99.4754 | 57.8446 | 17826 | 25 | 17825 | 94 | 5 | 5.3192 | |
| dgrover-gatk | SNP | ti | map_l125_m0_e0 | homalt | 99.4074 | 98.9757 | 99.8428 | 67.2382 | 4445 | 46 | 4445 | 7 | 5 | 71.4286 | |
| dgrover-gatk | SNP | ti | map_l250_m0_e0 | het | 97.5923 | 97.6445 | 97.5401 | 94.6125 | 912 | 22 | 912 | 23 | 5 | 21.7391 | |
| dgrover-gatk | SNP | tv | HG002compoundhet | homalt | 99.8671 | 99.9115 | 99.8228 | 42.6879 | 3385 | 3 | 3380 | 6 | 5 | 83.3333 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4856 | 99.3676 | 99.6038 | 88.3504 | 1257 | 8 | 1257 | 5 | 5 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4336 | 99.4962 | 99.3711 | 89.5036 | 790 | 4 | 790 | 5 | 5 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9175 | 99.8900 | 99.9450 | 60.3037 | 10899 | 12 | 10895 | 6 | 5 | 83.3333 | |
| dgrover-gatk | SNP | tv | map_l100_m1_e0 | homalt | 99.6730 | 99.4360 | 99.9111 | 59.6774 | 8992 | 51 | 8992 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e0 | homalt | 99.6791 | 99.4465 | 99.9128 | 62.0923 | 9163 | 51 | 9163 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l100_m2_e1 | homalt | 99.6821 | 99.4517 | 99.9136 | 62.0828 | 9251 | 51 | 9251 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m1_e0 | homalt | 99.5463 | 99.2321 | 99.8626 | 64.6877 | 5815 | 45 | 5815 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e0 | homalt | 99.5582 | 99.2521 | 99.8662 | 67.1591 | 5972 | 45 | 5972 | 8 | 5 | 62.5000 | |
| dgrover-gatk | SNP | tv | map_l125_m2_e1 | homalt | 99.5624 | 99.2591 | 99.8675 | 67.1759 | 6029 | 45 | 6029 | 8 | 5 | 62.5000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.0092 | 76.6467 | 95.4198 | 68.8095 | 128 | 39 | 125 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | D16_PLUS | HG002complexvar | homalt | 68.6813 | 56.0554 | 88.6486 | 67.8819 | 162 | 127 | 164 | 21 | 5 | 23.8095 | |