PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62201-62250 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2924 | 99.3785 | 95.2920 | 69.4798 | 1599 | 10 | 1599 | 79 | 4 | 5.0633 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 3.0372 | 74.0741 | 1.5504 | 75.3723 | 20 | 7 | 20 | 1270 | 4 | 0.3150 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 11.9658 | 93.3333 | 6.3927 | 89.8892 | 14 | 1 | 14 | 205 | 4 | 1.9512 | |
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | homalt | 95.2567 | 91.2259 | 99.6601 | 92.2128 | 1466 | 141 | 1466 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.6667 | 88.8889 | 5.6738 | 90.0424 | 8 | 1 | 8 | 133 | 4 | 3.0075 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.3491 | 99.6812 | 89.5584 | 44.0081 | 3439 | 11 | 3448 | 402 | 4 | 0.9950 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.9331 | 99.5790 | 85.3775 | 44.4518 | 2129 | 9 | 2137 | 366 | 4 | 1.0929 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 51.5722 | 36.5269 | 87.6923 | 81.3754 | 61 | 106 | 57 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 14.5215 | 7.8459 | 97.3510 | 52.6646 | 220 | 2584 | 147 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 15.8160 | 8.6076 | 97.2973 | 51.3158 | 204 | 2166 | 144 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | * | 81.3226 | 81.2500 | 81.3953 | 92.2662 | 26 | 6 | 35 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | het | 81.8620 | 85.0000 | 78.9474 | 92.4453 | 17 | 3 | 30 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 60.8637 | 44.5230 | 96.1538 | 69.9074 | 126 | 157 | 125 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 75.6451 | 61.5607 | 98.0861 | 70.4802 | 213 | 133 | 205 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 81.6959 | 69.6629 | 98.7539 | 35.5422 | 186 | 81 | 317 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 44.5230 | 36.0000 | 58.3333 | 84.0000 | 9 | 16 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 73.6842 | 100.0000 | 58.3333 | 83.5616 | 2 | 0 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_siren | homalt | 93.7374 | 88.6964 | 99.3860 | 68.7586 | 1075 | 137 | 1133 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | INDEL | I1_5 | segdup | homalt | 93.4028 | 88.3721 | 99.0408 | 89.7341 | 418 | 55 | 413 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4271 | 97.3897 | 99.4869 | 56.2693 | 1567 | 42 | 1551 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.2185 | 96.7495 | 99.7328 | 29.9465 | 2649 | 89 | 2613 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5864 | 98.0186 | 99.1607 | 45.3115 | 841 | 17 | 827 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | ti | map_l250_m0_e0 | homalt | 95.6171 | 92.6606 | 98.7685 | 92.5912 | 404 | 32 | 401 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.1847 | 95.8015 | 98.6083 | 75.1972 | 502 | 22 | 496 | 7 | 4 | 57.1429 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 91.3897 | 97.0060 | 86.3881 | 76.4855 | 1296 | 40 | 1282 | 202 | 4 | 1.9802 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.1761 | 97.7083 | 87.2368 | 73.1862 | 1407 | 33 | 1367 | 200 | 4 | 2.0000 | |
| gduggal-snapfb | INDEL | C1_5 | HG002compoundhet | * | 18.1818 | 100.0000 | 10.0000 | 71.4286 | 1 | 0 | 1 | 9 | 4 | 44.4444 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 4.0000 | 79.6748 | 0 | 1 | 1 | 24 | 4 | 16.6667 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 4.0000 | 79.6748 | 0 | 1 | 1 | 24 | 4 | 16.6667 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | * | 70.5882 | 75.0000 | 66.6667 | 92.2280 | 3 | 1 | 10 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 70.5882 | 100.0000 | 54.5455 | 96.1938 | 1 | 0 | 6 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 40.0000 | 95.6710 | 0 | 0 | 4 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 40.0000 | 95.6710 | 0 | 0 | 4 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 37.5000 | 95.8333 | 0 | 0 | 3 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m1_e0 | homalt | 98.6449 | 98.3108 | 98.9813 | 86.6742 | 582 | 10 | 583 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | homalt | 98.6039 | 98.1997 | 99.0115 | 87.1860 | 600 | 11 | 601 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.7366 | 54.6392 | 85.7143 | 3.4483 | 53 | 44 | 24 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | het | 81.8995 | 71.4286 | 95.9677 | 75.3968 | 90 | 36 | 119 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m1_e0 | homalt | 81.7391 | 73.4375 | 92.1569 | 88.6414 | 47 | 17 | 47 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | het | 80.6053 | 69.4656 | 96.0000 | 76.1905 | 91 | 40 | 120 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 82.0513 | 73.8462 | 92.3077 | 88.7931 | 48 | 17 | 48 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | het | 79.7221 | 68.1481 | 96.0317 | 76.1815 | 92 | 43 | 121 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | homalt | 81.6667 | 73.1343 | 92.4528 | 88.7712 | 49 | 18 | 49 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.9391 | 31.0680 | 18.1818 | 56.7921 | 64 | 142 | 48 | 216 | 4 | 1.8519 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | het | 92.9242 | 94.4785 | 91.4201 | 83.9430 | 308 | 18 | 309 | 29 | 4 | 13.7931 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.6564 | 99.2278 | 98.0916 | 86.1887 | 514 | 4 | 514 | 10 | 4 | 40.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.6891 | 99.2467 | 98.1378 | 87.1161 | 527 | 4 | 527 | 10 | 4 | 40.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.7109 | 99.2593 | 98.1685 | 87.1891 | 536 | 4 | 536 | 10 | 4 | 40.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | * | 93.2137 | 94.3182 | 92.1348 | 92.6899 | 166 | 10 | 164 | 14 | 4 | 28.5714 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | * | 66.6667 | 61.5385 | 72.7273 | 84.7222 | 16 | 10 | 16 | 6 | 4 | 66.6667 | |