PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6151-6200 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8131 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.3827 | 0 | 2 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.1623 | 100.0000 | 1102 | 192 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 78.3532 | 100.0000 | 1513 | 418 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 54.5455 | 0.0000 | 0.0000 | 6 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 54.5455 | 50.0000 | 60.0000 | 98.9733 | 2 | 2 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.7805 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 99.3711 | 0 | 2 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 73.6842 | 0.0000 | 0.0000 | 14 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 9 | 3 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.4478 | 99.5261 | 95.4545 | 52.1739 | 210 | 1 | 210 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 67.5753 | 0.0000 | 0.0000 | 471 | 226 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 77.3036 | 0.0000 | 0.0000 | 1250 | 367 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 84.4280 | 0.0000 | 0.0000 | 797 | 147 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 77.2589 | 0.0000 | 0.0000 | 1274 | 375 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 78.3532 | 100.0000 | 1513 | 418 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 84.1837 | 0.0000 | 0.0000 | 660 | 124 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 56.0364 | 0.0000 | 0.0000 | 246 | 193 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 91.6667 | 0.0000 | 0.0000 | 11 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 41.3223 | 100.0000 | 26.0417 | 79.7040 | 23 | 0 | 25 | 71 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 77.7778 | 0.0000 | 0.0000 | 7 | 2 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.8537 | 100.0000 | 298 | 30 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 79.1429 | 0.0000 | 0.0000 | 277 | 73 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 96.0784 | 0.0000 | 0.0000 | 49 | 2 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 80.0000 | 0.0000 | 0.0000 | 20 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 35.7447 | 85.7143 | 22.5806 | 94.7487 | 24 | 4 | 21 | 72 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | het | 35.7190 | 84.2105 | 22.6667 | 92.9112 | 16 | 3 | 17 | 58 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 34.7826 | 80.0000 | 22.2222 | 97.4755 | 4 | 1 | 4 | 14 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 73.0769 | 0.0000 | 0.0000 | 19 | 7 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 27.5766 | 73.3333 | 16.9811 | 93.8799 | 11 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 73.0769 | 0.0000 | 0.0000 | 19 | 7 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 27.6923 | 75.0000 | 16.9811 | 94.1436 | 12 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 0.0000 | 70.0000 | 0.0000 | 0.0000 | 21 | 9 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 27.6923 | 75.0000 | 16.9811 | 94.1950 | 12 | 4 | 9 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 59.0909 | 100.0000 | 41.9355 | 97.7714 | 12 | 0 | 13 | 18 | 0 | 0.0000 | |