PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61801-61850 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 93.7028 | 15 | 0 | 15 | 10 | 4 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | * | 69.0909 | 76.0000 | 63.3333 | 94.0358 | 19 | 6 | 19 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 94.4812 | 15 | 0 | 15 | 10 | 4 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | * | 71.1864 | 77.7778 | 65.6250 | 93.8697 | 21 | 6 | 21 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | het | 76.1905 | 100.0000 | 61.5385 | 94.4444 | 16 | 0 | 16 | 10 | 4 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | tech_badpromoters | * | 64.0000 | 61.5385 | 66.6667 | 62.5000 | 8 | 5 | 8 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | tech_badpromoters | het | 77.7778 | 100.0000 | 63.6364 | 62.0690 | 7 | 0 | 7 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7082 | 95.6585 | 99.8477 | 51.9462 | 3305 | 150 | 3279 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0887 | 98.2753 | 99.9156 | 51.4864 | 5983 | 105 | 5919 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.8272 | 95.9868 | 99.7397 | 74.0574 | 2320 | 97 | 2299 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.7824 | 97.6925 | 99.8969 | 31.5687 | 3895 | 92 | 3874 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | homalt | 98.4958 | 97.2985 | 99.7229 | 71.9123 | 2161 | 60 | 2159 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | homalt | 98.2846 | 97.0633 | 99.5370 | 78.0859 | 1289 | 39 | 1290 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | homalt | 98.1672 | 97.0794 | 99.2797 | 87.2766 | 831 | 25 | 827 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e0 | homalt | 98.0530 | 96.7983 | 99.3407 | 88.0609 | 907 | 30 | 904 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l250_m2_e1 | homalt | 98.0718 | 96.8288 | 99.3471 | 88.1389 | 916 | 30 | 913 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | homalt | 95.6522 | 93.9024 | 97.4684 | 94.4347 | 154 | 10 | 154 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0458 | 99.0458 | 99.0458 | 70.6113 | 519 | 5 | 519 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.0762 | 99.4760 | 94.7894 | 67.5394 | 1329 | 7 | 1328 | 73 | 4 | 5.4795 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6084 | 99.4152 | 92.0824 | 70.5431 | 850 | 5 | 849 | 73 | 4 | 5.4795 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.7647 | 95.1220 | 88.6364 | 91.7448 | 39 | 2 | 39 | 5 | 4 | 80.0000 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | homalt | 99.3993 | 98.9600 | 99.8426 | 67.1804 | 3806 | 40 | 3806 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 77.3061 | 64.3777 | 96.7320 | 84.4828 | 150 | 83 | 148 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 75.6632 | 61.3084 | 98.7952 | 82.4710 | 328 | 207 | 328 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.2442 | 67.8279 | 98.2249 | 72.7639 | 331 | 157 | 332 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.6103 | 83.5498 | 98.9744 | 59.1195 | 386 | 76 | 386 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 80.1567 | 70.5747 | 92.7492 | 83.3752 | 307 | 128 | 307 | 24 | 4 | 16.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 75.9237 | 62.4049 | 96.9194 | 87.0711 | 410 | 247 | 409 | 13 | 4 | 30.7692 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.7551 | 27.4074 | 60.6557 | 81.1728 | 37 | 98 | 37 | 24 | 4 | 16.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6526 | 70.7519 | 99.3664 | 48.9213 | 941 | 389 | 941 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | het | 84.4444 | 73.8627 | 98.5651 | 92.5841 | 893 | 316 | 893 | 13 | 4 | 30.7692 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | het | 88.8512 | 80.5007 | 99.1347 | 90.4602 | 1833 | 444 | 1833 | 16 | 4 | 25.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7626 | 99.5802 | 99.9456 | 54.3815 | 14708 | 62 | 14709 | 8 | 4 | 50.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.7075 | 99.0801 | 98.3378 | 83.1572 | 1831 | 17 | 1834 | 31 | 4 | 12.9032 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.7266 | 99.0601 | 98.3954 | 83.7702 | 1897 | 18 | 1901 | 31 | 4 | 12.9032 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.7423 | 99.0717 | 98.4151 | 83.8640 | 1921 | 18 | 1925 | 31 | 4 | 12.9032 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3151 | 99.0809 | 97.5610 | 86.3283 | 1078 | 10 | 1080 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3954 | 99.1251 | 97.6764 | 86.9350 | 1133 | 10 | 1135 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.4147 | 99.1357 | 97.7041 | 87.0012 | 1147 | 10 | 1149 | 27 | 4 | 14.8148 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.9683 | 98.9717 | 96.9849 | 89.2621 | 770 | 8 | 772 | 24 | 4 | 16.6667 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | homalt | 99.6580 | 99.6575 | 99.6584 | 78.7708 | 1164 | 4 | 1167 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.5323 | 89.9522 | 97.4093 | 74.9025 | 188 | 21 | 188 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.2449 | 88.9764 | 95.7627 | 76.5408 | 113 | 14 | 113 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1292 | 96.6767 | 99.6259 | 57.5998 | 1600 | 55 | 1598 | 6 | 4 | 66.6667 | |
| hfeng-pmm2 | INDEL | I16_PLUS | * | het | 98.4237 | 97.9029 | 98.9501 | 74.4344 | 2661 | 57 | 2639 | 28 | 4 | 14.2857 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.5140 | 96.5079 | 98.5413 | 64.5402 | 608 | 22 | 608 | 9 | 4 | 44.4444 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7593 | 99.5000 | 98.0296 | 59.8814 | 199 | 1 | 199 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.7467 | 97.8979 | 99.6103 | 71.3232 | 1304 | 28 | 1278 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.9545 | 96.0747 | 99.9093 | 57.3738 | 5507 | 225 | 5507 | 5 | 4 | 80.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5579 | 99.8227 | 99.2945 | 71.7629 | 563 | 1 | 563 | 4 | 4 | 100.0000 | |