PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61401-61450 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 87.8788 | 88.4211 | 0 | 0 | 29 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 92.2807 | 95.7828 | 0 | 1 | 263 | 22 | 4 | 18.1818 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 92.2807 | 95.7828 | 0 | 1 | 263 | 22 | 4 | 18.1818 | |
| jmaeng-gatk | SNP | ti | segdup | homalt | 99.4577 | 98.9740 | 99.9462 | 87.6674 | 7428 | 77 | 7428 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.1788 | 98.8665 | 99.4930 | 89.4926 | 785 | 9 | 785 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | SNP | tv | map_siren | homalt | 89.3303 | 80.7367 | 99.9713 | 58.2484 | 13919 | 3321 | 13916 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 62.8571 | 55.0000 | 73.3333 | 99.5745 | 11 | 9 | 11 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 76.9231 | 83.3333 | 71.4286 | 99.4659 | 10 | 2 | 10 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 78.4993 | 76.1905 | 80.9524 | 99.9062 | 16 | 5 | 17 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m1_e0 | homalt | 95.9887 | 93.1694 | 98.9840 | 82.2879 | 682 | 50 | 682 | 7 | 4 | 57.1429 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e1 | homalt | 95.1579 | 91.8699 | 98.6900 | 87.1240 | 452 | 40 | 452 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.2235 | 84.1085 | 97.2973 | 60.5684 | 217 | 41 | 216 | 6 | 4 | 66.6667 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m1_e0 | * | 92.5373 | 90.6433 | 94.5122 | 95.5544 | 155 | 16 | 155 | 9 | 4 | 44.4444 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 93.0748 | 91.3043 | 94.9153 | 95.7686 | 168 | 16 | 168 | 9 | 4 | 44.4444 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 93.1129 | 91.3514 | 94.9438 | 95.8431 | 169 | 16 | 169 | 9 | 4 | 44.4444 | |
| jpowers-varprowl | INDEL | D1_5 | segdup | homalt | 94.4928 | 90.8078 | 98.4894 | 93.0154 | 326 | 33 | 326 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | D6_15 | func_cds | * | 85.3659 | 81.3953 | 89.7436 | 54.6512 | 35 | 8 | 35 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | func_cds | het | 90.0000 | 93.1034 | 87.0968 | 53.0303 | 27 | 2 | 27 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 9.0909 | 97.3430 | 0 | 0 | 2 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 5.2632 | 96.2963 | 0 | 0 | 1 | 18 | 4 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 8.6957 | 97.4918 | 0 | 0 | 2 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 5.0000 | 96.4974 | 0 | 0 | 1 | 19 | 4 | 21.0526 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 8.6957 | 97.5162 | 0 | 0 | 2 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 5.0000 | 96.5338 | 0 | 0 | 1 | 19 | 4 | 21.0526 | |
| ciseli-custom | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 21.0526 | 98.7821 | 0 | 0 | 4 | 15 | 4 | 26.6667 | |
| ciseli-custom | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 18.7500 | 98.4541 | 0 | 0 | 3 | 13 | 4 | 30.7692 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.3482 | 63.4615 | 89.7436 | 70.8955 | 33 | 19 | 35 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 58.0645 | 50.0000 | 69.2308 | 31.5789 | 4 | 4 | 9 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | func_cds | * | 91.8919 | 96.2264 | 87.9310 | 36.2637 | 153 | 6 | 153 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | D1_5 | func_cds | het | 88.2979 | 97.6471 | 80.5825 | 43.4066 | 83 | 2 | 83 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | het | 58.7127 | 55.0000 | 62.9630 | 92.9412 | 33 | 27 | 34 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 57.0736 | 54.6875 | 59.6774 | 93.7183 | 35 | 29 | 37 | 25 | 4 | 16.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e0 | het | 50.0000 | 47.8261 | 52.3810 | 95.3998 | 22 | 24 | 22 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 50.5495 | 48.9362 | 52.2727 | 95.2586 | 23 | 24 | 23 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 25.0000 | 16.2162 | 54.5455 | 77.0833 | 6 | 31 | 6 | 5 | 4 | 80.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 58.8235 | 62.5000 | 55.5556 | 66.6667 | 5 | 3 | 5 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | * | 11.6505 | 6.9767 | 35.2941 | 93.5115 | 6 | 80 | 6 | 11 | 4 | 36.3636 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | homalt | 19.3548 | 14.2857 | 30.0000 | 87.1795 | 3 | 18 | 3 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 41.0416 | 26.7677 | 87.9310 | 92.1196 | 53 | 145 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 40.5704 | 26.3682 | 87.9310 | 93.3333 | 53 | 148 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 40.1098 | 25.9804 | 87.9310 | 93.5196 | 53 | 151 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 37.0370 | 33.3333 | 41.6667 | 99.0603 | 5 | 10 | 5 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I6_15 | func_cds | * | 53.1250 | 39.5349 | 80.9524 | 32.2581 | 17 | 26 | 17 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5758 | 99.3915 | 99.7609 | 70.9351 | 5390 | 33 | 5423 | 13 | 4 | 30.7692 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.3976 | 99.2333 | 99.5624 | 89.0421 | 906 | 7 | 910 | 4 | 4 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5758 | 99.3915 | 99.7609 | 70.9351 | 5390 | 33 | 5423 | 13 | 4 | 30.7692 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7253 | 99.7681 | 99.6824 | 38.1649 | 3442 | 8 | 3453 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6745 | 99.8597 | 99.4900 | 40.5130 | 2135 | 3 | 2146 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | tv | map_l250_m1_e0 | het | 96.1474 | 96.3626 | 95.9331 | 90.7498 | 1722 | 65 | 1722 | 73 | 4 | 5.4795 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5663 | 99.6000 | 99.5327 | 76.7518 | 2988 | 12 | 2982 | 14 | 4 | 28.5714 | |